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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16282530	C-A	Homo
SBS	Chr3	4879203	C-A	HET
SBS	Chr3	22278189	G-A	HET
SBS	Chr3	23027324	C-T	Homo
SBS	Chr3	24538674	A-T	Homo
SBS	Chr4	7401771	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13320
SBS	Chr4	9488790	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17320
SBS	Chr4	10227088	C-T	HET
SBS	Chr4	10448736	T-A	HET
SBS	Chr4	10448737	T-G	HET
SBS	Chr5	29786772	A-T	Homo
SBS	Chr6	8762780	A-T	HET
SBS	Chr6	26064169	A-T	Homo
SBS	Chr6	26279275	A-G	Homo
SBS	Chr7	11046826	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g18690
SBS	Chr7	25364947	A-T	HET
SBS	Chr7	25364948	C-T	HET
SBS	Chr8	7182088	A-T	HET
SBS	Chr8	15506994	C-T	HET
SBS	Chr8	27523048	T-A	HET
SBS	Chr9	9710730	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15890
SBS	Chr9	22641887	C-T	HET
SBS	Chr11	4190645	G-A	HET
SBS	Chr12	984346	G-A	HET
SBS	Chr12	7687437	C-T	HET
SBS	Chr12	25704753	C-A	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1887740	1887756	16
Deletion	Chr12	2335196	2335205	9
Deletion	Chr5	4142252	4142253	1
Deletion	Chr6	5809001	5861000	51999	12
Deletion	Chr12	8008001	8021000	12999	2
Deletion	Chr12	8067001	8103000	35999	7
Deletion	Chr11	8457954	8457968	14	LOC_Os11g15030
Deletion	Chr12	8990001	9031000	40999	9
Deletion	Chr12	9038001	9075000	36999	8
Deletion	Chr5	11455459	11455461	2
Deletion	Chr1	16767817	16767818	1
Deletion	Chr1	20130557	20130558	1
Deletion	Chr10	23100202	23100220	18
Deletion	Chr12	23158522	23158524	2
Deletion	Chr1	25130569	25130576	7
Deletion	Chr12	26644422	26644427	5
Deletion	Chr3	27294198	27294201	3
Deletion	Chr8	27443534	27443538	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	5982180	5982180	1
Insertion	Chr5	13911066	13911066	1
Insertion	Chr8	23542876	23542877	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	8001724	8006437	LOC_Os12g14110
Inversion	Chr4	11352677	12270325	LOC_Os04g21690
Inversion	Chr4	11352679	12270029	LOC_Os04g21690
Inversion	Chr9	17874033	17874282
Inversion	Chr10	22138466	22138585	LOC_Os10g41220

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7523237	Chr7	26005545	2
Translocation	Chr12	7868962	Chr6	6633359	LOC_Os12g13880
Translocation	Chr12	7869216	Chr6	6633227	LOC_Os12g13880
Translocation	Chr12	8149607	Chr6	5813311
Translocation	Chr12	8149611	Chr7	26004206
Translocation	Chr8	8401664	Chr4	22687678
Translocation	Chr4	9305094	Chr1	14326931	LOC_Os01g25360
Translocation	Chr4	9326791	Chr1	14323863
Translocation	Chr4	16444785	Chr1	1518196	LOC_Os04g27830
Translocation	Chr3	25386582	Chr1	15783907

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