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Mutant Information

Mutant Name	FN424-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN424-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14944125	C-A	HET	INTERGENIC
SBS	Chr1	23974691	T-C	HOMO	INTERGENIC
SBS	Chr1	31702791	G-T	HET	INTERGENIC
SBS	Chr1	39075748	C-A	HET	INTERGENIC
SBS	Chr1	39414631	A-C	HET	INTERGENIC
SBS	Chr2	3671083	A-T	HET	INTERGENIC
SBS	Chr2	16306274	T-C	HOMO	INTERGENIC
SBS	Chr2	25655445	A-T	HOMO	INTRON
SBS	Chr2	25655446	G-A	HOMO	INTRON
SBS	Chr2	25655453	G-A	HOMO	INTRON
SBS	Chr3	13542058	G-T	HET	SYNONYMOUS_CODING
SBS	Chr3	15224954	T-G	HET	INTRON
SBS	Chr3	22734726	C-G	HOMO	INTERGENIC
SBS	Chr3	29786023	T-C	HET	INTRON
SBS	Chr3	31934275	A-G	HET	UTR_5_PRIME
SBS	Chr3	32092242	C-T	HET	INTERGENIC
SBS	Chr3	33232689	T-A	HET	INTERGENIC
SBS	Chr3	34146972	C-A	HOMO	INTERGENIC
SBS	Chr3	34521579	C-G	HET	INTERGENIC
SBS	Chr4	2596995	T-G	HET	INTERGENIC
SBS	Chr4	4613758	C-T	HET	INTERGENIC
SBS	Chr4	6125376	C-T	HET	INTERGENIC
SBS	Chr4	9278356	A-T	HET	INTRON
SBS	Chr4	26084455	G-T	HET	INTERGENIC
SBS	Chr4	26084456	C-T	HET	INTERGENIC
SBS	Chr4	28935132	A-T	HOMO	INTERGENIC
SBS	Chr4	30040177	G-A	HET	INTERGENIC
SBS	Chr5	4392767	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08070
SBS	Chr6	9772501	C-T	HET	INTERGENIC
SBS	Chr6	9772502	G-A	HET	INTERGENIC
SBS	Chr6	9873073	G-A	HET	INTERGENIC
SBS	Chr6	26078952	G-T	HOMO	INTERGENIC
SBS	Chr7	13341086	G-C	HET	INTERGENIC
SBS	Chr7	14823477	C-T	HET	INTERGENIC
SBS	Chr7	22056743	A-G	HET	UTR_3_PRIME
SBS	Chr7	27018076	T-C	HET	INTRON
SBS	Chr8	1938830	A-G	HET	INTERGENIC
SBS	Chr8	2388462	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	3153453	C-T	HET	INTERGENIC
SBS	Chr9	4635219	C-T	HOMO	INTERGENIC
SBS	Chr9	10069936	C-G	HET	INTERGENIC
SBS	Chr9	20548518	A-G	HET	INTERGENIC
SBS	Chr10	3713423	T-G	HOMO	INTERGENIC
SBS	Chr10	11686857	G-A	HET	SPLICE_SITE_REGION
SBS	Chr11	9453142	G-A	HOMO	INTERGENIC
SBS	Chr11	9453143	C-G	HOMO	INTERGENIC
SBS	Chr12	5502979	C-T	HET	INTRON
SBS	Chr12	9442328	G-A	HET	INTRON
SBS	Chr12	19293400	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32010
SBS	Chr12	25363254	G-C	HOMO	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1190954	1190957	3
Deletion	Chr12	1547162	1547164	2
Deletion	Chr4	1787559	1787573	14
Deletion	Chr5	2622743	2622751	8	LOC_Os05g05320
Deletion	Chr10	3734635	3734639	4	LOC_Os10g07090
Deletion	Chr3	3831835	3831842	7
Deletion	Chr8	4928001	5482000	554000	92
Deletion	Chr11	6460383	6460384	1
Deletion	Chr7	7535613	7535625	12
Deletion	Chr5	8568447	8568451	4	LOC_Os05g15090
Deletion	Chr12	10279536	10279541	5
Deletion	Chr8	10388059	10388065	6
Deletion	Chr7	11736066	11736067	1
Deletion	Chr10	11839869	11839881	12
Deletion	Chr8	12634517	12634531	14
Deletion	Chr11	13091414	13091415	1
Deletion	Chr3	13387562	13387566	4
Deletion	Chr5	13395866	13395868	2
Deletion	Chr11	13894121	13894126	5
Deletion	Chr7	14346405	14346406	1
Deletion	Chr2	15721186	15721187	1
Deletion	Chr7	18937001	18950000	13000
Deletion	Chr8	19995140	19995141	1
Deletion	Chr7	19998694	19998698	4
Deletion	Chr9	21923038	21923039	1	LOC_Os09g38040
Deletion	Chr12	24671820	24671821	1
Deletion	Chr3	30450101	30450110	9	LOC_Os03g53090
Deletion	Chr3	30888327	30888328	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	2662104	2662105	2
Insertion	Chr4	27542955	27542966	12
Insertion	Chr10	11928195	11928195	1
Insertion	Chr3	459719	459719	1
Insertion	Chr8	23404387	23404387	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4848391	5517091
Inversion	Chr8	4848402	5517101
Inversion	Chr12	10391163	11402599	LOC_Os12g18080
Inversion	Chr8	12951566	12984920
Inversion	Chr3	26766570	27037831
Inversion	Chr3	32129410	32385687	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1877617	Chr2	16489309	LOC_Os02g27850
Translocation	Chr3	10134117	Chr1	18684954	LOC_Os01g33960
Translocation	Chr12	11401496	Chr7	23879145
Translocation	Chr12	11402592	Chr7	23879109
Translocation	Chr3	12222754	Chr1	31814583	2
Translocation	Chr3	12222766	Chr1	31813536	2
Translocation	Chr8	14785734	Chr1	20577297
Translocation	Chr6	23949050	Chr3	5096504
Translocation	Chr8	28318950	Chr5	5289560

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