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| Mutant Information |
|---|
| Mutant Name | FN4240-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4240-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16553799 | A-C | Homo | ||
| SBS | Chr1 | 20998790 | C-T | HET | ||
| SBS | Chr1 | 33670341 | G-A | Homo | ||
| SBS | Chr10 | 4734527 | A-G | Homo | ||
| SBS | Chr10 | 9607804 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g18850 |
| SBS | Chr10 | 962236 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g02544 |
| SBS | Chr11 | 10286058 | G-A | Homo | ||
| SBS | Chr11 | 17882325 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g30700 |
| SBS | Chr11 | 23831029 | A-T | HET | ||
| SBS | Chr12 | 14371343 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g25040 |
| SBS | Chr12 | 2183457 | C-T | HET | ||
| SBS | Chr12 | 2316259 | A-C | HET | ||
| SBS | Chr12 | 8669181 | C-A | HET | ||
| SBS | Chr12 | 8951815 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g15670 |
| SBS | Chr2 | 6718073 | C-T | Homo | ||
| SBS | Chr3 | 14890437 | C-T | Homo | ||
| SBS | Chr3 | 17598492 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g30880 |
| SBS | Chr3 | 30979550 | G-A | Homo | ||
| SBS | Chr3 | 3352041 | C-T | HET | ||
| SBS | Chr4 | 12839314 | T-A | Homo | ||
| SBS | Chr4 | 13897506 | T-C | Homo | ||
| SBS | Chr4 | 3194395 | A-T | Homo | ||
| SBS | Chr4 | 8839523 | C-T | Homo | ||
| SBS | Chr5 | 16418486 | G-T | HET | ||
| SBS | Chr5 | 8810601 | A-G | Homo | ||
| SBS | Chr6 | 21007805 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g35970 |
| SBS | Chr6 | 29505563 | G-A | HET | ||
| SBS | Chr6 | 364167 | G-C | Homo | ||
| SBS | Chr7 | 28160822 | G-T | HET | ||
| SBS | Chr7 | 9383392 | C-T | HET | ||
| SBS | Chr8 | 26481635 | C-T | HET | ||
| SBS | Chr9 | 13439602 | T-G | HET | ||
| SBS | Chr9 | 22080352 | T-C | HET | ||
| SBS | Chr9 | 545767 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g01790 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3287932 | 3287948 | 16 | LOC_Os06g06930 |
| Deletion | Chr5 | 4255820 | 4255823 | 3 | |
| Deletion | Chr12 | 4350777 | 4350800 | 23 | |
| Deletion | Chr5 | 4378222 | 4378244 | 22 | |
| Deletion | Chr9 | 6878449 | 6878452 | 3 | |
| Deletion | Chr10 | 9660742 | 9660746 | 4 | |
| Deletion | Chr11 | 12069463 | 12069464 | 1 | |
| Deletion | Chr4 | 13304282 | 13304287 | 5 | LOC_Os04g23310 |
| Deletion | Chr1 | 20070174 | 20070178 | 4 | LOC_Os01g36250 |
| Deletion | Chr11 | 21596245 | 21596246 | 1 | |
| Deletion | Chr12 | 23614249 | 23614250 | 1 | |
| Deletion | Chr1 | 27151335 | 27151353 | 18 | |
| Deletion | Chr7 | 28481001 | 28498000 | 16999 | 4 |
Insertions: 5
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 378419 | 433046 | LOC_Os12g01620 |
| Inversion | Chr12 | 378432 | 433062 | LOC_Os12g01620 |
| Inversion | Chr4 | 4808660 | 4881680 | LOC_Os04g08832 |
| Inversion | Chr9 | 20942642 | 20977547 | 2 |
| Inversion | Chr9 | 20945284 | 20977552 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 2319004 | Chr2 | 16818244 | LOC_Os09g04380 |
| Translocation | Chr11 | 18380110 | Chr5 | 16725007 | LOC_Os05g28550 |