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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	15180057	G-A	HET
SBS	Chr11	17396488	T-C	HET
SBS	Chr11	19600361	C-T	HET
SBS	Chr11	8484380	G-A	HET
SBS	Chr12	20292930	G-C	HET
SBS	Chr12	3459851	G-T	Homo
SBS	Chr2	21854353	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g36220
SBS	Chr2	3802409	G-A	HET
SBS	Chr2	5135769	G-A	HET
SBS	Chr2	7591624	G-A	HET
SBS	Chr3	19227193	G-A	Homo
SBS	Chr3	7526727	C-G	Homo
SBS	Chr4	10050193	C-G	HET
SBS	Chr4	16508444	T-G	HET
SBS	Chr5	15351022	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26410
SBS	Chr5	908940	C-A	Homo
SBS	Chr7	13022897	A-G	HET
SBS	Chr7	13542282	G-A	HET
SBS	Chr7	22240578	A-G	Homo
SBS	Chr7	8437630	T-C	Homo
SBS	Chr7	9809668	C-T	HET
SBS	Chr8	11639402	T-A	HET
SBS	Chr8	16017661	T-C	HET
SBS	Chr8	2612816	T-C	HET
SBS	Chr8	3273180	T-C	HET
SBS	Chr8	984956	G-A	HET
SBS	Chr9	16291784	G-T	Homo
SBS	Chr9	16601338	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g27300

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1474768	1474774	6
Deletion	Chr8	3977717	3977732	15
Deletion	Chr4	5130448	5130453	5
Deletion	Chr8	7932960	7932962	2
Deletion	Chr4	8039314	8039319	5
Deletion	Chr7	11364548	11364561	13
Deletion	Chr7	11588067	11588069	2
Deletion	Chr11	13301813	13301826	13
Deletion	Chr9	16241001	16343000	101999	15
Deletion	Chr9	16362001	16603000	240999	36
Deletion	Chr5	17271897	17271900	3	LOC_Os05g29850
Deletion	Chr8	17856460	17856463	3	LOC_Os08g29170
Deletion	Chr9	21679001	21921000	241999	44
Deletion	Chr9	21931001	22159000	227999	38
Deletion	Chr5	22799799	22799805	6
Deletion	Chr7	23430975	23430980	5
Deletion	Chr12	24253171	24253176	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	5943189	5943539	351
Insertion	Chr10	21836199	21836200	2
Insertion	Chr11	9949954	9949954	1
Insertion	Chr5	11965623	11965623	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2567857	3403165
Inversion	Chr11	5903497	5903717
Inversion	Chr9	15916720	16291582	LOC_Os09g26340
Inversion	Chr9	20553419	20733199	LOC_Os09g35980
Inversion	Chr9	20553432	20733212	LOC_Os09g35980
Inversion	Chr7	25761148	25761544
Inversion	Chr6	27367805	27368242	LOC_Os06g45280

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3615324	Chr1	21959760	LOC_Os01g39060
Translocation	Chr12	6181809	Chr4	16026052
Translocation	Chr9	19025419	Chr4	34446297	LOC_Os04g57850
Translocation	Chr9	19025426	Chr4	34445389	LOC_Os04g57850
Translocation	Chr9	21400560	Chr2	18636883	LOC_Os09g37110

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