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| Mutant Information |
|---|
| Mutant Name | FN4249-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4249-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18845021 | C-T | HET | ||
| SBS | Chr1 | 25036745 | C-A | HET | ||
| SBS | Chr1 | 25286586 | T-A | HET | ||
| SBS | Chr1 | 30903441 | T-G | HET | ||
| SBS | Chr1 | 41337168 | A-G | HET | ||
| SBS | Chr10 | 18730464 | C-T | Homo | ||
| SBS | Chr10 | 6022698 | C-G | HET | ||
| SBS | Chr11 | 25303709 | C-T | Homo | ||
| SBS | Chr11 | 9804749 | A-G | Homo | ||
| SBS | Chr12 | 4454941 | C-T | HET | ||
| SBS | Chr12 | 9293633 | C-T | HET | ||
| SBS | Chr3 | 32893439 | C-T | Homo | ||
| SBS | Chr4 | 31896360 | C-A | HET | ||
| SBS | Chr4 | 7136387 | T-C | HET | ||
| SBS | Chr5 | 10182477 | C-T | HET | ||
| SBS | Chr5 | 12858014 | G-T | HET | ||
| SBS | Chr5 | 15353835 | G-T | HET | ||
| SBS | Chr5 | 28970440 | G-A | Homo | ||
| SBS | Chr5 | 7626126 | T-C | Homo | ||
| SBS | Chr6 | 2019670 | G-A | HET | ||
| SBS | Chr6 | 24798030 | G-A | Homo | ||
| SBS | Chr6 | 8461024 | A-T | Homo | ||
| SBS | Chr7 | 11523529 | A-T | HET | ||
| SBS | Chr7 | 18621418 | C-T | HET | ||
| SBS | Chr7 | 22366058 | C-T | HET | ||
| SBS | Chr7 | 23647957 | A-T | HET | ||
| SBS | Chr8 | 20208025 | G-A | HET | ||
| SBS | Chr8 | 20494196 | T-C | HET | ||
| SBS | Chr9 | 8303127 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14040 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 3810113 | 3810114 | 1 | |
| Deletion | Chr1 | 4815728 | 4816076 | 348 | |
| Deletion | Chr11 | 7727514 | 7727528 | 14 | |
| Deletion | Chr12 | 8093859 | 8093861 | 2 | |
| Deletion | Chr1 | 9498566 | 9498581 | 15 | LOC_Os01g16730 |
| Deletion | Chr12 | 10383813 | 10383814 | 1 | LOC_Os12g18060 |
| Deletion | Chr5 | 12737153 | 12737169 | 16 | |
| Deletion | Chr8 | 18361872 | 18361873 | 1 | LOC_Os08g29870 |
| Deletion | Chr8 | 28227451 | 28227453 | 2 | |
| Deletion | Chr4 | 30946094 | 30946095 | 1 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 7686663 | 7871128 | LOC_Os07g13710 |
| Inversion | Chr7 | 7686693 | 7871134 | LOC_Os07g13710 |
| Inversion | Chr9 | 16854741 | 17393520 | LOC_Os09g27690 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3055886 | Chr3 | 34057199 | 2 |
| Translocation | Chr10 | 21170890 | Chr3 | 16224320 | LOC_Os10g39620 |
| Translocation | Chr10 | 21170907 | Chr3 | 16223451 | LOC_Os10g39620 |
| Translocation | Chr11 | 22180241 | Chr5 | 16082507 | |
| Translocation | Chr7 | 22208108 | Chr6 | 353722 | |
| Translocation | Chr12 | 22476176 | Chr9 | 494994 | LOC_Os09g01700 |
| Translocation | Chr12 | 22476185 | Chr9 | 494203 |