Search Results
| Mutant Information |
|---|
| Mutant Name | FN4255-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4255-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13835379 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g24540 |
| SBS | Chr1 | 25534922 | G-C | HET | ||
| SBS | Chr1 | 34696272 | C-T | HET | ||
| SBS | Chr1 | 43227405 | T-A | HET | ||
| SBS | Chr2 | 7251110 | C-A | HET | ||
| SBS | Chr2 | 26186875 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g43390 |
| SBS | Chr2 | 28192161 | C-A | Homo | ||
| SBS | Chr2 | 31185429 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g50980 |
| SBS | Chr3 | 718682 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g02160 |
| SBS | Chr3 | 21406739 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g38570 |
| SBS | Chr4 | 7845535 | G-A | HET | ||
| SBS | Chr6 | 2609995 | T-A | HET | ||
| SBS | Chr6 | 24573417 | G-A | HET | ||
| SBS | Chr7 | 16876553 | C-T | HET | ||
| SBS | Chr8 | 7200606 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g12220 |
| SBS | Chr8 | 9714355 | A-C | HET | ||
| SBS | Chr8 | 11823914 | C-G | HET | ||
| SBS | Chr8 | 11833485 | A-G | HET | ||
| SBS | Chr8 | 11865191 | G-T | HET | ||
| SBS | Chr8 | 11865192 | G-T | HET | ||
| SBS | Chr8 | 13318996 | A-T | HET | ||
| SBS | Chr8 | 16239983 | T-C | HET | ||
| SBS | Chr9 | 4670224 | A-G | HET | ||
| SBS | Chr9 | 8937715 | G-A | Homo | ||
| SBS | Chr10 | 9162852 | A-G | HET | ||
| SBS | Chr10 | 10103628 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g20120 |
| SBS | Chr11 | 26091651 | A-G | HET | ||
| SBS | Chr12 | 14807717 | C-T | HET | ||
| SBS | Chr12 | 18825849 | C-G | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 3516069 | 3516074 | 5 | |
| Deletion | Chr1 | 6693536 | 6693537 | 1 | |
| Deletion | Chr3 | 8273578 | 8273583 | 5 | LOC_Os03g15140 |
| Deletion | Chr8 | 11824001 | 11833000 | 8999 | 2 |
| Deletion | Chr4 | 19697582 | 19697597 | 15 | |
| Deletion | Chr1 | 25158001 | 25406000 | 247999 | 35 |
| Deletion | Chr7 | 28976322 | 28976339 | 17 | |
| Deletion | Chr5 | 29123384 | 29123387 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 1291925 | 1291925 | 1 | |
| Insertion | Chr2 | 7739877 | 7739877 | 1 | |
| Insertion | Chr4 | 10575288 | 10575289 | 2 | |
| Insertion | Chr12 | 10912810 | 10912810 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 13458498 | 13459115 | LOC_Os02g22570 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 10628773 | Chr1 | 22308690 | LOC_Os12g18374 |
| Translocation | Chr11 | 19840944 | Chr1 | 954860 | LOC_Os01g02750 |
| Translocation | Chr4 | 25205775 | Chr3 | 16531126 |