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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4336834	T-A	HET	INTRON
SBS	Chr11	20069371	G-C	HOMO	INTRON
SBS	Chr2	29368572	G-C	HET	INTERGENIC
SBS	Chr2	30469564	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g49860
SBS	Chr2	68919	A-G	HOMO	INTERGENIC
SBS	Chr3	4467224	C-T	HET	INTERGENIC
SBS	Chr4	18528421	A-C	HET	INTRON
SBS	Chr4	33511067	G-A	HET	INTERGENIC
SBS	Chr4	642474	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	283834	A-T	HET	INTERGENIC
SBS	Chr5	283835	A-T	HET	INTERGENIC
SBS	Chr5	7437646	A-G	HOMO	INTRON
SBS	Chr6	13536118	A-T	HOMO	INTERGENIC
SBS	Chr6	7963519	C-G	HOMO	INTERGENIC
SBS	Chr7	16536956	A-T	HET	INTERGENIC
SBS	Chr7	17948527	G-A	HET	INTERGENIC
SBS	Chr7	18125340	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	18483811	A-C	HET	INTERGENIC
SBS	Chr7	27238232	C-T	HET	INTRON
SBS	Chr7	5271887	G-A	HOMO	INTERGENIC
SBS	Chr8	1404066	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	6966675	C-T	HOMO	INTERGENIC
SBS	Chr9	9649713	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g15800

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	282333	282339	6
Deletion	Chr1	3511284	3511287	3
Deletion	Chr3	3789434	3789438	4
Deletion	Chr1	5233169	5233171	2
Deletion	Chr5	5650436	5650437	1
Deletion	Chr10	6005735	6005741	6
Deletion	Chr7	6728488	6728502	14
Deletion	Chr5	7359507	7359517	10
Deletion	Chr5	7372753	7374788	2035	LOC_Os05g13300
Deletion	Chr3	7931861	7931862	1
Deletion	Chr3	7986190	7986199	9	LOC_Os03g14690
Deletion	Chr3	8987903	9016517	28614	4
Deletion	Chr12	9326156	9326165	9
Deletion	Chr4	12768763	12768764	1
Deletion	Chr4	13007335	13007351	16
Deletion	Chr8	15599107	15599114	7	LOC_Os08g25624
Deletion	Chr4	16201366	16201368	2
Deletion	Chr10	19121293	19121311	18
Deletion	Chr4	19231427	19231428	1	LOC_Os04g32060
Deletion	Chr1	21054432	21054433	1
Deletion	Chr8	23177305	23177310	5
Deletion	Chr3	23314649	23314653	4
Deletion	Chr12	24379229	24379230	1
Deletion	Chr12	25552462	25552470	8
Deletion	Chr8	25942873	25942881	8
Deletion	Chr1	26411828	26411830	2
Deletion	Chr5	26964001	27025000	61000	13
Deletion	Chr2	31196039	31196043	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	871553	871554	2
Insertion	Chr12	11007901	11007902	2
Insertion	Chr12	25900257	25900258	2
Insertion	Chr6	4375743	4375744	2	LOC_Os06g08740
Insertion	Chr7	3643477	3643479	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	22002933	22087617	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11625320	Chr3	23147740	LOC_Os12g19960
Translocation	Chr10	15476004	Chr3	18904930
Translocation	Chr8	22002945	Chr5	274092	2
Translocation	Chr8	22088126	Chr3	27047201	2
Translocation	Chr8	22088146	Chr5	274079	2
Translocation	Chr8	22691939	Chr5	612865
Translocation	Chr8	22693943	Chr5	549447	LOC_Os08g36010

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