Search Results
| Mutant Information |
|---|
| Mutant Name | FN4275-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4275-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20760422 | C-T | HET | ||
| SBS | Chr1 | 33229903 | A-C | HET | ||
| SBS | Chr1 | 36736241 | A-G | HET | STOP_LOST | LOC_Os01g63410 |
| SBS | Chr2 | 5737474 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g10800 |
| SBS | Chr2 | 11832393 | G-A | Homo | ||
| SBS | Chr2 | 23977420 | C-A | HET | ||
| SBS | Chr3 | 16340082 | T-C | HET | ||
| SBS | Chr3 | 30317613 | G-A | HET | ||
| SBS | Chr3 | 31256890 | A-G | HET | ||
| SBS | Chr3 | 32364484 | C-T | HET | ||
| SBS | Chr4 | 11568832 | A-G | HET | ||
| SBS | Chr4 | 14334751 | C-T | HET | ||
| SBS | Chr4 | 30423913 | A-T | Homo | ||
| SBS | Chr5 | 528390 | T-C | Homo | ||
| SBS | Chr5 | 7752912 | T-C | HET | ||
| SBS | Chr5 | 9909004 | G-A | HET | ||
| SBS | Chr7 | 8528527 | C-T | Homo | ||
| SBS | Chr8 | 17449478 | G-A | Homo | ||
| SBS | Chr8 | 18448745 | T-G | Homo | ||
| SBS | Chr9 | 9827565 | C-A | HET | ||
| SBS | Chr9 | 9827568 | C-A | HET | ||
| SBS | Chr10 | 15924800 | A-T | Homo | ||
| SBS | Chr11 | 14221133 | A-T | Homo | ||
| SBS | Chr11 | 15901164 | T-A | Homo | ||
| SBS | Chr12 | 943635 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g02690 |
| SBS | Chr12 | 1898014 | C-T | Homo | ||
| SBS | Chr12 | 10726118 | C-T | HET | ||
| SBS | Chr12 | 20718415 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g34170 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1279001 | 1398000 | 118999 | 22 |
| Deletion | Chr12 | 1597580 | 1597592 | 12 | LOC_Os12g03870 |
| Deletion | Chr4 | 2633535 | 2633536 | 1 | |
| Deletion | Chr12 | 3572119 | 3572128 | 9 | |
| Deletion | Chr7 | 4468267 | 4468271 | 4 | |
| Deletion | Chr7 | 5699462 | 5699464 | 2 | |
| Deletion | Chr1 | 9789606 | 9789625 | 19 | |
| Deletion | Chr7 | 11801077 | 11801098 | 21 | |
| Deletion | Chr4 | 13978586 | 13978593 | 7 | LOC_Os04g24370 |
| Deletion | Chr11 | 17833194 | 17833196 | 2 | |
| Deletion | Chr11 | 20001851 | 20001853 | 2 | |
| Deletion | Chr4 | 31297300 | 31297309 | 9 | |
| Deletion | Chr1 | 32089910 | 32089916 | 6 |
Insertions: 5
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 6640406 | 7502487 | |
| Inversion | Chr1 | 6640411 | 7502493 | |
| Inversion | Chr9 | 16007475 | 16007745 | |
| Inversion | Chr3 | 34445480 | 35106765 | LOC_Os03g61930 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 12577665 | Chr4 | 2200028 | LOC_Os04g04600 |
| Translocation | Chr8 | 16320815 | Chr5 | 15019252 | 2 |
| Translocation | Chr6 | 19938410 | Chr4 | 26320404 | LOC_Os06g34240 |
| Translocation | Chr6 | 19938851 | Chr4 | 26320424 | |
| Translocation | Chr12 | 24332920 | Chr3 | 20216506 | |
| Translocation | Chr4 | 27262079 | Chr3 | 35106769 | 2 |
| Translocation | Chr4 | 27268105 | Chr3 | 34445486 |