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| Mutant Information |
|---|
| Mutant Name | FN4279-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4279-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13392014 | G-A | Homo | ||
| SBS | Chr1 | 13392015 | G-A | Homo | ||
| SBS | Chr1 | 13985196 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g24830 |
| SBS | Chr10 | 13594694 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g26260 |
| SBS | Chr11 | 17656301 | T-C | HET | ||
| SBS | Chr11 | 6100663 | A-G | HET | ||
| SBS | Chr12 | 15323772 | C-G | Homo | ||
| SBS | Chr12 | 3253539 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g06680 |
| SBS | Chr12 | 7417691 | G-A | Homo | ||
| SBS | Chr3 | 10571913 | C-T | Homo | ||
| SBS | Chr3 | 6506541 | G-A | Homo | ||
| SBS | Chr4 | 14029366 | T-G | Homo | ||
| SBS | Chr4 | 15356799 | G-T | Homo | ||
| SBS | Chr4 | 1562255 | G-A | HET | ||
| SBS | Chr4 | 4278654 | G-A | HET | ||
| SBS | Chr5 | 14025347 | C-A | HET | ||
| SBS | Chr5 | 18733063 | A-T | HET | ||
| SBS | Chr5 | 18733064 | A-T | HET | ||
| SBS | Chr6 | 12974871 | A-C | Homo | ||
| SBS | Chr6 | 17011138 | C-A | Homo | ||
| SBS | Chr6 | 30304546 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g50030 |
| SBS | Chr6 | 6123472 | C-T | HET | ||
| SBS | Chr7 | 10511171 | A-G | HET | ||
| SBS | Chr7 | 11555084 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g19530 |
| SBS | Chr7 | 18936252 | A-G | HET | ||
| SBS | Chr8 | 25806282 | G-A | Homo | ||
| SBS | Chr8 | 26119688 | A-T | Homo | ||
| SBS | Chr8 | 8666723 | T-C | Homo | ||
| SBS | Chr9 | 22544624 | C-T | HET | ||
| SBS | Chr9 | 9307587 | G-T | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1247001 | 1277000 | 29999 | 4 |
| Deletion | Chr12 | 2663742 | 2663755 | 13 | LOC_Os12g05780 |
| Deletion | Chr5 | 2952812 | 2952819 | 7 | |
| Deletion | Chr4 | 7399123 | 7399127 | 4 | LOC_Os04g13310 |
| Deletion | Chr2 | 8725346 | 8725367 | 21 | |
| Deletion | Chr2 | 8995300 | 8995310 | 10 | |
| Deletion | Chr1 | 13155069 | 13155077 | 8 | |
| Deletion | Chr1 | 13195001 | 13206000 | 10999 | 3 |
| Deletion | Chr4 | 15882982 | 15882985 | 3 | |
| Deletion | Chr8 | 17960893 | 17960894 | 1 | |
| Deletion | Chr8 | 19746212 | 19746233 | 21 | LOC_Os08g31850 |
| Deletion | Chr6 | 21253856 | 21253861 | 5 | |
| Deletion | Chr1 | 26801141 | 26801149 | 8 | |
| Deletion | Chr5 | 26963450 | 26963464 | 14 | |
| Deletion | Chr4 | 33150831 | 33150833 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 16190205 | 16190205 | 1 | |
| Insertion | Chr12 | 17115290 | 17115290 | 1 | |
| Insertion | Chr8 | 13065401 | 13065401 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 17491308 | 17491617 | LOC_Os08g28630 |
| Inversion | Chr5 | 18592782 | 18868303 | LOC_Os05g31920 |
| Inversion | Chr5 | 18592805 | 18871852 | 2 |
| Inversion | Chr4 | 21759164 | 22030906 | |
| Inversion | Chr7 | 26565498 | 26565605 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 2047788 | Chr4 | 4120156 | 2 |
| Translocation | Chr8 | 15254855 | Chr5 | 20460468 | |
| Translocation | Chr8 | 15254930 | Chr3 | 25836058 | |
| Translocation | Chr11 | 27570515 | Chr5 | 16490137 | |
| Translocation | Chr11 | 28348469 | Chr1 | 23459991 |