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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13358277	T-A	HET	INTERGENIC
SBS	Chr1	23592423	C-T	HET	INTRON
SBS	Chr10	11852717	C-T	HET	INTERGENIC
SBS	Chr10	14712251	C-G	HET	INTRON
SBS	Chr10	2054499	G-T	HET	INTRON
SBS	Chr10	5705650	A-G	HET	INTRON
SBS	Chr10	7364121	C-T	HET	INTERGENIC
SBS	Chr10	8142093	C-A	HET	INTERGENIC
SBS	Chr11	10387381	C-T	HET	INTERGENIC
SBS	Chr11	14656173	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25690
SBS	Chr11	16059261	A-C	HET	INTERGENIC
SBS	Chr11	20921260	C-G	HOMO	INTERGENIC
SBS	Chr11	4808469	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr12	14192153	T-C	HET	INTERGENIC
SBS	Chr2	19493815	C-G	HOMO	INTERGENIC
SBS	Chr2	6630619	G-T	HET	INTERGENIC
SBS	Chr2	6630628	C-G	HET	INTERGENIC
SBS	Chr3	11868403	A-G	HET	INTERGENIC
SBS	Chr3	15044899	C-A	HET	INTERGENIC
SBS	Chr3	15816535	C-G	HET	INTERGENIC
SBS	Chr4	24637602	T-A	HET	INTERGENIC
SBS	Chr4	26149653	A-C	HET	INTERGENIC
SBS	Chr4	33250445	A-G	HET	INTRON
SBS	Chr4	35200829	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59180
SBS	Chr5	12405915	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g21100
SBS	Chr6	1027341	G-C	HOMO	INTERGENIC
SBS	Chr6	11008668	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	30997112	A-G	HET	INTERGENIC
SBS	Chr7	19699419	G-A	HET	INTERGENIC
SBS	Chr7	23211636	C-A	HOMO	INTERGENIC
SBS	Chr7	26170635	A-T	HET	INTRON
SBS	Chr7	6481069	A-T	HOMO	INTERGENIC
SBS	Chr8	14182835	C-T	HET	INTERGENIC
SBS	Chr8	1433899	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	16627322	A-T	HET	SYNONYMOUS_CODING
SBS	Chr9	2575790	G-A	HET	INTRON
SBS	Chr9	9031731	T-C	HET	INTERGENIC
SBS	Chr9	9031738	C-T	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	422623	422629	6	LOC_Os04g01620
Deletion	Chr2	491313	491334	21
Deletion	Chr8	1121407	1121411	4	LOC_Os08g02690
Deletion	Chr6	1192464	1192466	2
Deletion	Chr10	5219287	5219291	4
Deletion	Chr3	5781451	5782277	826	LOC_Os03g11240
Deletion	Chr2	6189654	6189656	2
Deletion	Chr12	6859950	6859951	1
Deletion	Chr9	7159892	7159897	5
Deletion	Chr5	8968421	8968434	13
Deletion	Chr4	11029285	11029294	9	LOC_Os04g19740
Deletion	Chr9	12253110	12253113	3	LOC_Os09g20390
Deletion	Chr12	12715861	12715862	1
Deletion	Chr10	14697829	14697838	9
Deletion	Chr9	16043995	16044000	5
Deletion	Chr9	16548207	16548208	1
Deletion	Chr5	17472181	17472182	1
Deletion	Chr9	17644829	17644836	7
Deletion	Chr11	19403217	19403218	1
Deletion	Chr9	19601922	19601936	14
Deletion	Chr3	22984824	22985481	657	LOC_Os03g41339
Deletion	Chr5	23208382	23208383	1
Deletion	Chr8	23251303	23251307	4	LOC_Os08g36800
Deletion	Chr7	23387657	23387666	9
Deletion	Chr3	23552282	23552318	36
Deletion	Chr3	24390321	24390323	2
Deletion	Chr3	24546616	24546618	2
Deletion	Chr1	26434144	26434145	1	LOC_Os01g46470
Deletion	Chr11	28234919	28234920	1
Deletion	Chr3	32648348	32648356	8
Deletion	Chr2	32781237	32781246	9
Deletion	Chr3	34550489	34550493	4
Deletion	Chr4	35356806	35356809	3
Deletion	Chr1	42687683	42687693	10

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	5380941	5380944	4
Insertion	Chr4	3952441	3952445	5
Insertion	Chr4	5114680	5114681	2
Insertion	Chr6	23644970	23644990	21
Insertion	Chr7	13751670	13751670	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5874016	6749964
Inversion	Chr2	6195499	6749889
Inversion	Chr2	6841314	7023466	LOC_Os02g13170
Inversion	Chr2	6841329	7023462	LOC_Os02g13170
Inversion	Chr4	17906985	18125369	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	166474	Chr3	1013848
Translocation	Chr9	9030562	Chr3	5781464	LOC_Os03g11240
Translocation	Chr8	9498456	Chr7	25287862	LOC_Os07g42250
Translocation	Chr9	19096342	Chr8	21862201
Translocation	Chr9	19097131	Chr8	21862189

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