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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21926167	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39000
SBS	Chr1	31235620	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54290
SBS	Chr10	100241	G-C	HET	INTERGENIC
SBS	Chr10	16460233	C-T	HET	INTERGENIC
SBS	Chr10	21457844	T-C	HET	INTRON
SBS	Chr10	2430615	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g04990
SBS	Chr11	25475478	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g42300
SBS	Chr11	25475479	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	10575284	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18320
SBS	Chr12	10575289	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18320
SBS	Chr12	12153482	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21624
SBS	Chr12	12153483	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21624
SBS	Chr12	18212698	G-C	HET	INTERGENIC
SBS	Chr12	24758534	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	24962269	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	13986527	A-G	HOMO	INTRON
SBS	Chr2	13986528	G-A	HOMO	INTRON
SBS	Chr2	15458359	T-C	HOMO	INTERGENIC
SBS	Chr2	15700760	C-T	HOMO	INTERGENIC
SBS	Chr2	16516010	T-A	HOMO	INTERGENIC
SBS	Chr2	32917087	C-T	HET	UTR_5_PRIME
SBS	Chr2	33430160	A-C	HET	SYNONYMOUS_CODING
SBS	Chr4	12967635	C-A	HOMO	INTERGENIC
SBS	Chr4	26550315	C-T	HOMO	INTERGENIC
SBS	Chr5	10062839	G-A	HET	INTERGENIC
SBS	Chr5	21017815	G-A	HET	INTERGENIC
SBS	Chr5	24415888	G-A	HOMO	INTRON
SBS	Chr5	26671766	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46010
SBS	Chr6	14339922	C-T	HOMO	INTERGENIC
SBS	Chr6	15111754	G-A	HET	INTERGENIC
SBS	Chr6	28126468	T-A	HET	INTERGENIC
SBS	Chr7	21094446	A-G	HET	INTERGENIC
SBS	Chr7	25521580	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g42626
SBS	Chr8	11489217	T-G	HET	INTRON
SBS	Chr8	13911424	C-T	HET	INTERGENIC
SBS	Chr8	25259276	G-T	HET	INTERGENIC
SBS	Chr8	25511045	T-C	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	440877	440882	5
Deletion	Chr2	763952	763966	14
Deletion	Chr2	1364036	1364061	25
Deletion	Chr3	1856520	1856522	2	LOC_Os03g04050
Deletion	Chr9	3194978	3195155	177
Deletion	Chr10	3869582	3869599	17	LOC_Os10g07340
Deletion	Chr8	6057490	6057497	7
Deletion	Chr1	8826806	8826812	6	LOC_Os01g15690
Deletion	Chr12	9189526	9189538	12
Deletion	Chr10	10056001	10062000	6000	LOC_Os10g20040
Deletion	Chr9	10097111	10097126	15	LOC_Os09g16480
Deletion	Chr12	10259961	10259982	21
Deletion	Chr4	10839700	10839701	1
Deletion	Chr5	12228801	12228813	12
Deletion	Chr6	12919587	12930552	10965	2
Deletion	Chr11	14674355	14874960	200605	27
Deletion	Chr10	15708001	15727000	19000	3
Deletion	Chr11	17394001	17488000	94000	14
Deletion	Chr8	20142382	20142383	1
Deletion	Chr1	20726001	20827000	101000	16
Deletion	Chr5	21424237	21424239	2
Deletion	Chr3	21460586	21460590	4	LOC_Os03g38650
Deletion	Chr3	21903750	21903751	1	LOC_Os03g39407
Deletion	Chr8	21905176	21905181	5
Deletion	Chr1	21926150	21926153	3	LOC_Os01g39000
Deletion	Chr2	21934806	21934813	7	LOC_Os02g36340
Deletion	Chr1	22236815	22236816	1
Deletion	Chr10	23098367	23098379	12	LOC_Os10g42830
Deletion	Chr1	23626119	23626120	1	LOC_Os01g41730
Deletion	Chr3	23627668	23627915	247	LOC_Os03g42464
Deletion	Chr11	25151571	25151583	12
Deletion	Chr11	25544811	25544812	1
Deletion	Chr1	28108216	28108217	1
Deletion	Chr2	34078381	34078394	13
Deletion	Chr4	34169573	34169581	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	5970091	5970092	2
Insertion	Chr6	25813057	25813060	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7229235	33506512	LOC_Os01g57960
Inversion	Chr2	14153703	15172623
Inversion	Chr11	14488126	14874960	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	134551	Chr4	27738423	LOC_Os04g46800
Translocation	Chr11	10449195	Chr6	17476342	LOC_Os11g18540
Translocation	Chr12	13397062	Chr9	7173807
Translocation	Chr9	16353861	Chr2	18616565
Translocation	Chr11	20393605	Chr7	18351882
Translocation	Chr6	23038834	Chr3	20268687	LOC_Os03g36560

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