Search Results
| Mutant Information |
|---|
| Mutant Name | FN4300-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4300-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17885521 | C-A | HET | ||
| SBS | Chr1 | 27013198 | T-C | HET | ||
| SBS | Chr1 | 38217123 | A-G | HET | ||
| SBS | Chr1 | 38217124 | C-T | HET | ||
| SBS | Chr1 | 38533961 | G-A | HET | ||
| SBS | Chr2 | 5967353 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g11130 |
| SBS | Chr2 | 21854360 | T-G | HET | ||
| SBS | Chr2 | 22156795 | T-A | HET | ||
| SBS | Chr3 | 7624115 | C-G | HET | ||
| SBS | Chr4 | 1467679 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g03420 |
| SBS | Chr4 | 2766703 | T-A | HET | ||
| SBS | Chr4 | 16127826 | C-T | Homo | ||
| SBS | Chr5 | 6486794 | A-C | HET | ||
| SBS | Chr6 | 5831919 | T-A | HET | ||
| SBS | Chr6 | 9312033 | G-A | Homo | ||
| SBS | Chr6 | 16125212 | T-C | HET | ||
| SBS | Chr6 | 17820567 | C-T | HET | ||
| SBS | Chr6 | 24555126 | G-A | Homo | ||
| SBS | Chr7 | 2292441 | A-T | Homo | ||
| SBS | Chr8 | 4438822 | A-G | Homo | ||
| SBS | Chr8 | 6556386 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g11150 |
| SBS | Chr8 | 9672534 | T-C | HET | ||
| SBS | Chr9 | 22587361 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g39300 |
| SBS | Chr10 | 1467203 | T-G | Homo | ||
| SBS | Chr10 | 17558732 | C-A | HET | ||
| SBS | Chr10 | 19147326 | C-T | HET | ||
| SBS | Chr11 | 6438159 | C-T | HET | ||
| SBS | Chr11 | 12641080 | C-T | Homo | ||
| SBS | Chr11 | 20200715 | A-G | HET | ||
| SBS | Chr12 | 3075928 | C-T | Homo | ||
| SBS | Chr12 | 8084920 | A-T | HET | ||
| SBS | Chr12 | 11784357 | T-C | Homo | ||
| SBS | Chr12 | 16666044 | C-T | HET | ||
| SBS | Chr12 | 16666045 | C-T | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 770851 | 770852 | 1 | |
| Deletion | Chr8 | 4465067 | 4465068 | 1 | |
| Deletion | Chr12 | 5261030 | 5261031 | 1 | |
| Deletion | Chr10 | 12530215 | 12530228 | 13 | |
| Deletion | Chr2 | 12711117 | 12711118 | 1 | |
| Deletion | Chr4 | 15790001 | 16015000 | 224999 | 23 |
| Deletion | Chr9 | 16158906 | 16158907 | 1 | LOC_Os09g26630 |
| Deletion | Chr4 | 16290001 | 16303000 | 12999 | LOC_Os04g27550 |
| Deletion | Chr4 | 19940569 | 19940580 | 11 | |
| Deletion | Chr11 | 23773095 | 23773133 | 38 | LOC_Os11g39880 |
| Deletion | Chr4 | 24386085 | 24386092 | 7 | LOC_Os04g41110 |
| Deletion | Chr12 | 24389784 | 24389789 | 5 | |
| Deletion | Chr3 | 27595635 | 27595637 | 2 | |
| Deletion | Chr4 | 28465495 | 28465518 | 23 | |
| Deletion | Chr2 | 32280217 | 32280233 | 16 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 3081536 | 3081537 | 2 | |
| Insertion | Chr3 | 3895807 | 3895807 | 1 | LOC_Os03g07670 |
| Insertion | Chr8 | 5914608 | 5914693 | 86 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 5558698 | 5802976 | |
| Inversion | Chr4 | 28764415 | 28795211 | |
| Inversion | Chr4 | 28764418 | 28795139 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 4545361 | Chr1 | 5772018 | 2 |
| Translocation | Chr4 | 4547476 | Chr1 | 5558662 | LOC_Os04g08450 |
| Translocation | Chr12 | 7417519 | Chr8 | 16333966 | |
| Translocation | Chr7 | 10246963 | Chr5 | 22423668 | |
| Translocation | Chr4 | 11722607 | Chr1 | 1564669 | LOC_Os01g03740 |
| Translocation | Chr3 | 13186252 | Chr1 | 5802977 | |
| Translocation | Chr3 | 13186255 | Chr1 | 5772029 | LOC_Os01g10820 |
| Translocation | Chr6 | 23437421 | Chr4 | 33991189 | |
| Translocation | Chr11 | 23740972 | Chr7 | 24849957 | LOC_Os07g41470 |
| Translocation | Chr5 | 28997442 | Chr1 | 18368269 | LOC_Os05g50570 |
| Translocation | Chr5 | 28999565 | Chr1 | 18368264 |