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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16456891	A-G	HET
SBS	Chr1	20588625	A-C	Homo
SBS	Chr2	1195105	A-T	HET
SBS	Chr2	2419907	A-G	HET
SBS	Chr2	6444709	T-G	HET
SBS	Chr2	14487397	A-G	Homo
SBS	Chr2	18361060	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g30800
SBS	Chr2	28763540	G-T	Homo
SBS	Chr3	16952029	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g29750
SBS	Chr3	18645561	C-A	HET
SBS	Chr4	10944639	T-A	HET
SBS	Chr4	15208594	A-G	HET
SBS	Chr4	33507662	G-T	Homo
SBS	Chr5	25591113	G-A	HET
SBS	Chr6	4885471	G-A	Homo
SBS	Chr6	21573334	A-T	HET
SBS	Chr6	29025112	G-A	HET
SBS	Chr6	29094047	G-A	HET
SBS	Chr6	30770403	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g50850
SBS	Chr7	11530242	C-T	Homo
SBS	Chr7	18768495	T-C	HET
SBS	Chr7	28342803	C-A	Homo
SBS	Chr7	28399521	C-G	Homo
SBS	Chr7	28399544	T-C	Homo
SBS	Chr8	9728799	C-G	HET
SBS	Chr8	21029461	C-T	Homo
SBS	Chr9	16038415	G-A	Homo
SBS	Chr9	22181826	C-A	HET
SBS	Chr10	6468368	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g11696
SBS	Chr10	11144076	G-A	Homo
SBS	Chr11	3696038	T-A	HET
SBS	Chr11	23486303	T-C	HET
SBS	Chr12	21541257	C-A	HET
SBS	Chr12	23476527	G-A	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	4187174	4187175	1
Deletion	Chr5	6019018	6019030	12
Deletion	Chr9	7490419	7490423	4
Deletion	Chr10	14213517	14213529	12
Deletion	Chr10	14374635	14374641	6
Deletion	Chr8	17211512	17211517	5
Deletion	Chr7	17707254	17707258	4	LOC_Os07g30040
Deletion	Chr1	18915877	18915879	2
Deletion	Chr2	19957960	19957962	2
Deletion	Chr10	22011768	22011861	93
Deletion	Chr1	23043545	23043546	1
Deletion	Chr8	25558402	25558405	3	LOC_Os08g40370
Deletion	Chr1	34053453	34053497	44	LOC_Os01g58920
Deletion	Chr1	37704058	37704108	50

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	21857991	21857994	4
Insertion	Chr6	28144274	28144274	1
Insertion	Chr1	17057524	17057525	2	LOC_Os01g31190
Insertion	Chr2	35735831	35735831	1	LOC_Os02g58430
Insertion	Chr6	31526	31537	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3398501	3852964
Inversion	Chr3	3665372	3840064	LOC_Os03g07160
Inversion	Chr11	25301588	25301928

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	858416	Chr11	815534	2
Translocation	Chr12	8376265	Chr3	25764651	LOC_Os12g14650
Translocation	Chr12	12958534	Chr7	7799854
Translocation	Chr7	16850881	Chr3	25690549	LOC_Os03g45519
Translocation	Chr12	21737271	Chr6	7862478	LOC_Os06g14100
Translocation	Chr12	22022341	Chr4	15487592
Translocation	Chr6	22661759	Chr3	4064889	LOC_Os06g38294
Translocation	Chr7	24279900	Chr5	28945253	LOC_Os05g50480
Translocation	Chr7	24279903	Chr5	28945254	LOC_Os05g50480

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