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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7630547	C-T	HET
SBS	Chr1	11225696	G-A	Homo
SBS	Chr1	28947134	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g50420
SBS	Chr1	29549358	G-A	HET
SBS	Chr1	31122849	C-T	HET
SBS	Chr1	34464890	A-G	HET
SBS	Chr1	37482129	C-T	HET
SBS	Chr1	42096832	C-T	Homo
SBS	Chr2	29333653	G-A	Homo
SBS	Chr3	5044469	C-A	HET
SBS	Chr3	24392781	C-G	Homo
SBS	Chr3	36325441	A-G	HET
SBS	Chr4	10319099	C-A	Homo
SBS	Chr4	15984847	G-T	HET
SBS	Chr4	26562414	T-A	HET
SBS	Chr4	33211398	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55790
SBS	Chr5	327990	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g01560
SBS	Chr5	14983876	A-G	HET
SBS	Chr6	16000505	C-A	HET
SBS	Chr6	28636521	A-T	Homo
SBS	Chr6	28822442	G-A	Homo
SBS	Chr6	28822443	T-A	Homo
SBS	Chr7	4581810	C-A	HET
SBS	Chr7	17113554	T-A	Homo
SBS	Chr7	19895670	T-C	Homo
SBS	Chr8	15780850	A-G	HET
SBS	Chr8	17261582	T-C	Homo
SBS	Chr9	2654265	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04940
SBS	Chr9	9469625	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15470
SBS	Chr9	18131124	C-T	Homo
SBS	Chr9	21531290	A-G	Homo
SBS	Chr10	9955644	G-A	HET
SBS	Chr10	21048998	T-A	HET
SBS	Chr11	321677	A-T	HET
SBS	Chr11	3832730	A-T	HET
SBS	Chr11	7969526	G-A	HET
SBS	Chr11	16006699	C-T	HET
SBS	Chr11	21441025	A-T	HET
SBS	Chr11	21679671	G-C	HET
SBS	Chr12	1091547	G-T	Homo
SBS	Chr12	12659043	G-C	HET
SBS	Chr12	13413089	A-G	HET
SBS	Chr12	21466907	G-C	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2116001	2175000	58999	9
Deletion	Chr2	2304666	2304674	8
Deletion	Chr4	2874001	3160000	285999	41
Deletion	Chr4	3093663	3093665	2
Deletion	Chr10	3536563	3536569	6
Deletion	Chr1	7171109	7171111	2
Deletion	Chr12	8459840	8459842	2
Deletion	Chr9	9109001	9121000	11999	2
Deletion	Chr10	10781679	10781685	6
Deletion	Chr6	11468474	11468476	2
Deletion	Chr3	17127001	17127007	6
Deletion	Chr2	18626380	18626387	7
Deletion	Chr10	21057278	21057288	10
Deletion	Chr8	23128714	23128716	2
Deletion	Chr1	26144378	26144381	3	LOC_Os01g46000
Deletion	Chr6	27469734	27469745	11
Deletion	Chr3	31099351	31099352	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	11463124	11463125	2
Insertion	Chr7	12157728	12157728	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2119455	2646911
Inversion	Chr4	2178413	2548819	LOC_Os04g04550
Inversion	Chr4	29160481	29191419	LOC_Os04g48940
Inversion	Chr4	29160493	29191427	LOC_Os04g48940
Inversion	Chr1	31296437	31316393	LOC_Os01g54424
Inversion	Chr1	31296443	31316402	LOC_Os01g54424

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9110462	Chr8	15781615	2
Translocation	Chr9	9120982	Chr8	15781575	2
Translocation	Chr10	15830978	Chr1	40720849	LOC_Os10g30460
Translocation	Chr10	15831271	Chr1	40720853	LOC_Os10g30460

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