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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13589883	G-A	HET	INTERGENIC
SBS	Chr1	31188880	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54220
SBS	Chr10	12222867	C-T	HET	INTERGENIC
SBS	Chr10	14458099	G-A	HET	INTERGENIC
SBS	Chr10	15319786	G-A	HET	INTRON
SBS	Chr10	18836218	A-T	HET	INTERGENIC
SBS	Chr10	20152754	G-A	HET	INTERGENIC
SBS	Chr10	4287465	G-A	HET	INTERGENIC
SBS	Chr11	12980550	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22570
SBS	Chr12	15214231	G-A	HOMO	INTERGENIC
SBS	Chr12	27446979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g44280
SBS	Chr2	13962620	G-A	HET	INTERGENIC
SBS	Chr3	25222853	G-T	HOMO	INTERGENIC
SBS	Chr4	15087792	T-A	HET	INTRON
SBS	Chr5	12853468	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22650
SBS	Chr5	23339380	C-T	HET	INTERGENIC
SBS	Chr5	6576767	T-C	HET	INTERGENIC
SBS	Chr6	12189195	C-T	HET	INTRON
SBS	Chr7	6368225	C-G	HOMO	INTERGENIC
SBS	Chr7	6443277	C-A	HET	INTERGENIC
SBS	Chr7	6443278	C-T	HET	INTERGENIC
SBS	Chr7	6443279	T-A	HET	INTERGENIC
SBS	Chr7	7833006	T-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	780001	873000	93000	18
Deletion	Chr7	782711	892519	109808	18
Deletion	Chr1	1246084	1246085	1
Deletion	Chr8	3789032	3789049	17	LOC_Os08g06790
Deletion	Chr9	5404902	5404903	1
Deletion	Chr5	5523724	5523726	2	LOC_Os05g09736
Deletion	Chr1	6390993	6390997	4	LOC_Os01g11810
Deletion	Chr2	6810466	6810475	9
Deletion	Chr2	6981644	6981648	4
Deletion	Chr9	10029012	10029013	1
Deletion	Chr2	10074660	10074661	1	LOC_Os02g17500
Deletion	Chr6	10599702	10599716	14
Deletion	Chr4	11040493	11040500	7	LOC_Os04g19760
Deletion	Chr2	11577234	11577244	10	LOC_Os02g19790
Deletion	Chr10	13294077	13294079	2
Deletion	Chr6	13779307	13779314	7
Deletion	Chr10	13905843	13905848	5
Deletion	Chr10	15793744	15793745	1
Deletion	Chr1	19481876	19481888	12
Deletion	Chr9	19524604	19524606	2	LOC_Os09g32740
Deletion	Chr6	19902514	19902515	1
Deletion	Chr9	20353356	20353360	4
Deletion	Chr2	21607027	21607048	21	LOC_Os02g35960
Deletion	Chr3	27454520	27454544	24	LOC_Os03g48250
Deletion	Chr1	33530422	33530426	4
Deletion	Chr3	35042779	35043382	603	LOC_Os03g61810
Deletion	Chr3	35462447	35462456	9	LOC_Os03g62660
Deletion	Chr3	36052428	36052438	10	LOC_Os03g63820

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	18832874	18832875	2
Insertion	Chr6	28300445	28300448	4
Insertion	Chr6	29635298	29635298	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9204757	9647319	2
Inversion	Chr4	16350978	16866154	2
Inversion	Chr3	25289417	25363766

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	845096	Chr4	16866201	LOC_Os04g28480
Translocation	Chr7	845125	Chr4	15153031
Translocation	Chr12	1631172	Chr11	10418312	LOC_Os12g03940
Translocation	Chr11	8214653	Chr5	29794130
Translocation	Chr8	15765188	Chr3	15248019	2

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