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| Mutant Information |
|---|
| Mutant Name | FN4311-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4311-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17481893 | G-A | Homo | ||
| SBS | Chr1 | 17484120 | A-T | Homo | ||
| SBS | Chr1 | 19537632 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g35290 |
| SBS | Chr1 | 30947436 | G-A | Homo | ||
| SBS | Chr1 | 30947437 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g53830 |
| SBS | Chr1 | 38805247 | A-T | HET | ||
| SBS | Chr1 | 5140056 | T-C | HET | ||
| SBS | Chr10 | 124216 | G-A | HET | ||
| SBS | Chr10 | 22805950 | C-T | HET | ||
| SBS | Chr10 | 5189266 | G-A | HET | ||
| SBS | Chr11 | 10277595 | G-A | HET | ||
| SBS | Chr11 | 2064450 | T-A | HET | ||
| SBS | Chr11 | 25482998 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g42320 |
| SBS | Chr2 | 15105120 | C-A | Homo | ||
| SBS | Chr2 | 15105121 | T-A | Homo | ||
| SBS | Chr2 | 30922840 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g50620 |
| SBS | Chr2 | 3207211 | G-T | HET | ||
| SBS | Chr3 | 16933200 | T-C | HET | ||
| SBS | Chr3 | 27658548 | T-A | HET | ||
| SBS | Chr3 | 6620695 | C-T | Homo | ||
| SBS | Chr4 | 17536308 | C-T | HET | ||
| SBS | Chr6 | 25311359 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g42160 |
| SBS | Chr6 | 30345320 | G-A | HET | ||
| SBS | Chr6 | 5827843 | C-T | HET | ||
| SBS | Chr7 | 16715774 | G-A | HET | ||
| SBS | Chr7 | 17747198 | G-A | HET | ||
| SBS | Chr8 | 13670511 | T-G | Homo | ||
| SBS | Chr9 | 15007579 | G-A | Homo | ||
| SBS | Chr9 | 16639642 | C-T | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 393711 | 393724 | 13 | |
| Deletion | Chr9 | 1658916 | 1658925 | 9 | |
| Deletion | Chr1 | 3633226 | 3633227 | 1 | |
| Deletion | Chr9 | 9673001 | 9710000 | 36999 | 5 |
| Deletion | Chr7 | 12175977 | 12175978 | 1 | |
| Deletion | Chr8 | 20956443 | 20956447 | 4 | LOC_Os08g33560 |
| Deletion | Chr2 | 25656559 | 25656562 | 3 | |
| Deletion | Chr7 | 26395346 | 26395348 | 2 | LOC_Os07g44160 |
| Deletion | Chr8 | 27081191 | 27081193 | 2 | LOC_Os08g42830 |
| Deletion | Chr1 | 35352348 | 35352349 | 1 | |
| Deletion | Chr3 | 35955616 | 35955617 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 20879985 | 20879985 | 1 | |
| Insertion | Chr12 | 24691399 | 24691399 | 1 | LOC_Os12g39950 |
| Insertion | Chr12 | 27167041 | 27167228 | 188 | |
| Insertion | Chr3 | 5872731 | 5872732 | 2 | |
| Insertion | Chr8 | 11235992 | 11235992 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 4299342 | 4408967 | |
| Inversion | Chr5 | 4299350 | 4408969 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6399861 | Chr5 | 10232218 | |
| Translocation | Chr8 | 9306294 | Chr3 | 19341021 | 2 |
| Translocation | Chr9 | 16680084 | Chr2 | 10459219 | LOC_Os02g18030 |
| Translocation | Chr12 | 17474860 | Chr4 | 6571791 | |
| Translocation | Chr12 | 25725575 | Chr2 | 7526393 | |
| Translocation | Chr11 | 27768474 | Chr1 | 12717032 | LOC_Os11g45908 |