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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15793169	T-G	HET	INTRON
SBS	Chr1	29542577	G-A	HOMO	INTERGENIC
SBS	Chr1	34919998	G-C	HET	INTERGENIC
SBS	Chr1	9208525	G-A	HET	INTRON
SBS	Chr10	10072282	G-A	HET	INTERGENIC
SBS	Chr11	1221376	G-C	HET	INTERGENIC
SBS	Chr11	13851105	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	7900081	T-A	HET	UTR_3_PRIME
SBS	Chr12	16669608	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	17237042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29120
SBS	Chr12	18804632	T-G	HET	INTRON
SBS	Chr12	8859679	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	32268254	A-C	HOMO	INTERGENIC
SBS	Chr2	6579241	T-C	HOMO	INTRON
SBS	Chr2	9204378	C-T	HET	INTERGENIC
SBS	Chr3	28273651	G-T	HOMO	INTRON
SBS	Chr3	32893619	G-C	HOMO	INTERGENIC
SBS	Chr3	3697794	A-G	HET	INTRON
SBS	Chr4	10875864	G-A	HOMO	INTRON
SBS	Chr5	23426168	G-A	HET	INTERGENIC
SBS	Chr5	23660695	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g40270
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	7167186	T-G	HOMO	INTRON
SBS	Chr6	16322523	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g28660
SBS	Chr6	4503283	G-C	HET	INTERGENIC
SBS	Chr7	25554584	C-G	HET	SYNONYMOUS_CODING
SBS	Chr8	17610363	G-A	HOMO	INTERGENIC
SBS	Chr8	17610364	G-T	HOMO	INTERGENIC
SBS	Chr8	3804235	C-T	HET	INTERGENIC
SBS	Chr9	13778000	C-T	HOMO	INTERGENIC
SBS	Chr9	18636154	A-G	HET	INTERGENIC
SBS	Chr9	1931101	T-G	HET	INTERGENIC
SBS	Chr9	21414912	C-G	HET	INTERGENIC
SBS	Chr9	4107808	C-G	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1481778	1481780	2
Deletion	Chr10	4204132	4204145	13
Deletion	Chr6	4491698	4491699	1	LOC_Os06g08910
Deletion	Chr11	7323537	7323575	38
Deletion	Chr8	7369657	7369658	1
Deletion	Chr8	8994052	8994063	11
Deletion	Chr5	11525224	11525240	16	LOC_Os05g19750
Deletion	Chr12	12260885	12260918	33	LOC_Os12g21784
Deletion	Chr9	12470001	12511000	41000	6
Deletion	Chr7	12767458	12767460	2
Deletion	Chr10	13198918	13198938	20
Deletion	Chr7	13906869	13906873	4
Deletion	Chr9	16101298	16101300	2
Deletion	Chr3	18088001	18637000	549000	73
Deletion	Chr3	18657985	18657987	2
Deletion	Chr7	22413714	22413715	1
Deletion	Chr12	23717500	23717510	10	LOC_Os12g38610
Deletion	Chr3	24975001	24983000	8000	2
Deletion	Chr8	27625588	27625590	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2580941	2580944	4
Insertion	Chr1	31904143	31904143	1
Insertion	Chr1	41329020	41329020	1
Insertion	Chr4	19644590	19644591	2
Insertion	Chr4	4260793	4260796	4
Insertion	Chr6	28897523	28897523	1
Insertion	Chr8	23241390	23241390	1

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7555888	Chr8	6127291
Translocation	Chr10	9894536	Chr1	23525337
Translocation	Chr12	13394797	Chr3	35423623
Translocation	Chr9	13442818	Chr3	15242192	2
Translocation	Chr7	17250513	Chr4	5000289	LOC_Os04g09380
Translocation	Chr12	22869066	Chr9	12469498	LOC_Os12g37270
Translocation	Chr12	22869223	Chr9	12511186	LOC_Os12g37270

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