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Mutant Information

Mutant Name	FN433-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN433-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10916883	C-T	HOMO	INTERGENIC
SBS	Chr2	22445050	A-G	HET	UTR_3_PRIME
SBS	Chr3	13565552	A-C	HOMO	INTERGENIC
SBS	Chr3	18280828	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g31950
SBS	Chr4	16518071	A-C	HET	INTERGENIC
SBS	Chr4	16790836	A-C	HET	INTERGENIC
SBS	Chr5	14662676	G-C	HET	INTERGENIC
SBS	Chr6	11383072	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g19900
SBS	Chr7	12564859	G-A	HOMO	INTERGENIC
SBS	Chr8	4833456	C-T	HET	INTERGENIC
SBS	Chr8	12855697	G-A	HET	INTRON
SBS	Chr8	15870759	T-C	HET	INTERGENIC
SBS	Chr9	18655042	C-T	HET	STOP_GAINED	LOC_Os09g30970
SBS	Chr10	8827244	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17489
SBS	Chr10	19438868	A-G	HOMO	INTRON
SBS	Chr11	22839130	C-T	HOMO	INTERGENIC
SBS	Chr12	2787078	A-G	HET	INTERGENIC
SBS	Chr12	2834848	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	721436	721444	8	LOC_Os08g02150
Deletion	Chr12	2751001	2785000	34000	5
Deletion	Chr1	4245425	4245431	6	LOC_Os01g08550
Deletion	Chr10	8570959	8570960	1	LOC_Os10g17100
Deletion	Chr11	8654742	8654746	4
Deletion	Chr5	9326659	9326660	1
Deletion	Chr1	10563043	10582288	19245	4
Deletion	Chr12	14341556	14341557	1
Deletion	Chr1	15918756	15918766	10	LOC_Os01g28400
Deletion	Chr11	16501428	16501432	4
Deletion	Chr8	18298103	18298107	4
Deletion	Chr6	19857114	19857115	1
Deletion	Chr11	21330792	21330793	1
Deletion	Chr8	23635718	23635721	3
Deletion	Chr8	23817547	23834150	16603	3
Deletion	Chr7	25548001	25564000	16000	4
Deletion	Chr6	25609001	25623000	14000	4
Deletion	Chr6	26971427	26992138	20711	5
Deletion	Chr1	41020634	41020644	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	20825012	20825012	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7137732	8280725	LOC_Os09g12480

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	822540	Chr4	16367931	LOC_Os11g02600
Translocation	Chr12	2749216	Chr3	23453737	2
Translocation	Chr12	2751317	Chr3	23453731	LOC_Os03g42140
Translocation	Chr10	15601443	Chr3	15597776	LOC_Os10g30054
Translocation	Chr10	15631936	Chr3	15597774	LOC_Os10g30090
Translocation	Chr4	16367930	Chr2	14530818	LOC_Os02g25060
Translocation	Chr9	20666147	Chr4	16367968
Translocation	Chr11	23187874	Chr4	16367928
Translocation	Chr11	23317154	Chr8	9385608	2