Search Results
Mutant Information |
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Mutant Name | FN434-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN434-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 28
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 8147943 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g14530 |
SBS | Chr2 | 7439608 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 8643788 | A-G | HET | INTRON | |
SBS | Chr2 | 26304188 | T-G | HOMO | INTERGENIC | |
SBS | Chr3 | 21873157 | G-A | HET | INTRON | |
SBS | Chr4 | 11153266 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20010 |
SBS | Chr5 | 8664270 | C-T | HOMO | INTERGENIC | |
SBS | Chr5 | 8715917 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 16230499 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g27840 |
SBS | Chr5 | 22436991 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g38264 |
SBS | Chr5 | 24645513 | G-T | HET | SYNONYMOUS_CODING | |
SBS | Chr5 | 24645514 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g42150 |
SBS | Chr6 | 68290 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 5933652 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 15637813 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 8404042 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 12932562 | C-T | HET | INTRON | |
SBS | Chr7 | 20953156 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 23995263 | T-G | HET | INTERGENIC | |
SBS | Chr7 | 24982855 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 652259 | T-A | HET | INTERGENIC | |
SBS | Chr9 | 744314 | A-G | HET | INTERGENIC | |
SBS | Chr9 | 5888371 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g10790 |
SBS | Chr9 | 13516315 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 14843162 | T-G | HET | INTERGENIC | |
SBS | Chr10 | 15468601 | C-G | HOMO | INTERGENIC | |
SBS | Chr11 | 18130973 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 21511518 | A-T | HET | INTERGENIC |
Deletions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 656311 | 656313 | 2 | |
Deletion | Chr1 | 1130403 | 1130407 | 4 | |
Deletion | Chr2 | 1131329 | 1144117 | 12788 | 2 |
Deletion | Chr11 | 2695914 | 2695928 | 14 | |
Deletion | Chr12 | 4335659 | 4366535 | 30876 | 3 |
Deletion | Chr9 | 4349164 | 4349165 | 1 | |
Deletion | Chr8 | 7443722 | 7443730 | 8 | |
Deletion | Chr10 | 8764007 | 8764008 | 1 | LOC_Os10g17390 |
Deletion | Chr5 | 9423920 | 9423926 | 6 | |
Deletion | Chr2 | 12079171 | 12079172 | 1 | |
Deletion | Chr11 | 12857435 | 12857437 | 2 | |
Deletion | Chr2 | 17364528 | 17364546 | 18 | |
Deletion | Chr7 | 17696797 | 17696798 | 1 | |
Deletion | Chr2 | 18592001 | 18669000 | 77000 | 7 |
Deletion | Chr2 | 18675001 | 18738000 | 63000 | 7 |
Deletion | Chr3 | 19876788 | 19876793 | 5 | |
Deletion | Chr11 | 21238796 | 21238797 | 1 | |
Deletion | Chr4 | 22824700 | 22824708 | 8 | |
Deletion | Chr5 | 23596143 | 23596144 | 1 | |
Deletion | Chr8 | 24796113 | 24796127 | 14 | |
Deletion | Chr7 | 27801052 | 27801097 | 45 | |
Deletion | Chr2 | 35086291 | 35086297 | 6 | LOC_Os02g57270 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 3959845 | 3959846 | 2 | |
Insertion | Chr2 | 17953013 | 17953013 | 1 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 6000017 | 9543884 | LOC_Os04g17440 |
Inversion | Chr8 | 13844145 | 15093482 | |
Inversion | Chr8 | 13844818 | 15093474 | |
Inversion | Chr3 | 35791716 | 36042667 | 2 |
Inversion | Chr3 | 35791758 | 36042672 | 2 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 3648320 | Chr5 | 491797 | |
Translocation | Chr8 | 13849072 | Chr4 | 11400697 | |
Translocation | Chr8 | 22073317 | Chr2 | 1131342 | LOC_Os02g02910 |