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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8147943	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g14530
SBS	Chr10	14843162	T-G	HET	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr11	18130973	C-T	HET	INTERGENIC
SBS	Chr12	21511518	A-T	HET	INTERGENIC
SBS	Chr2	26304188	T-G	HOMO	INTERGENIC
SBS	Chr2	7439608	G-A	HET	INTERGENIC
SBS	Chr2	8643788	A-G	HET	INTRON
SBS	Chr3	21873157	G-A	HET	INTRON
SBS	Chr4	11153266	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20010
SBS	Chr5	16230499	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g27840
SBS	Chr5	22436991	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g38264
SBS	Chr5	24645513	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	24645514	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g42150
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr5	8715917	G-A	HOMO	INTERGENIC
SBS	Chr6	15637813	G-A	HET	INTERGENIC
SBS	Chr6	5933652	G-A	HET	INTERGENIC
SBS	Chr6	68290	G-A	HET	INTERGENIC
SBS	Chr7	12932562	C-T	HET	INTRON
SBS	Chr7	20953156	G-A	HET	INTERGENIC
SBS	Chr7	23995263	T-G	HET	INTERGENIC
SBS	Chr7	24982855	C-A	HET	INTERGENIC
SBS	Chr7	8404042	C-T	HET	INTERGENIC
SBS	Chr9	13516315	C-T	HET	INTERGENIC
SBS	Chr9	5888371	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10790
SBS	Chr9	652259	T-A	HET	INTERGENIC
SBS	Chr9	744314	A-G	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	656311	656313	2
Deletion	Chr1	1130403	1130407	4
Deletion	Chr2	1131329	1144117	12788	2
Deletion	Chr11	2695914	2695928	14
Deletion	Chr12	4335659	4366535	30876	3
Deletion	Chr9	4349164	4349165	1
Deletion	Chr8	7443722	7443730	8
Deletion	Chr10	8764007	8764008	1	LOC_Os10g17390
Deletion	Chr5	9423920	9423926	6
Deletion	Chr2	12079171	12079172	1
Deletion	Chr11	12857435	12857437	2
Deletion	Chr2	17364528	17364546	18
Deletion	Chr7	17696797	17696798	1
Deletion	Chr2	18592001	18669000	77000	7
Deletion	Chr2	18675001	18738000	63000	7
Deletion	Chr3	19876788	19876793	5
Deletion	Chr11	21238796	21238797	1
Deletion	Chr4	22824700	22824708	8
Deletion	Chr5	23596143	23596144	1
Deletion	Chr8	24796113	24796127	14
Deletion	Chr7	27801052	27801097	45
Deletion	Chr2	35086291	35086297	6	LOC_Os02g57270

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	3959845	3959846	2
Insertion	Chr2	17953013	17953013	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6000017	9543884	LOC_Os04g17440
Inversion	Chr8	13844145	15093482
Inversion	Chr8	13844818	15093474
Inversion	Chr3	35791716	36042667	2
Inversion	Chr3	35791758	36042672	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3648320	Chr5	491797
Translocation	Chr8	13849072	Chr4	11400697
Translocation	Chr8	22073317	Chr2	1131342	LOC_Os02g02910

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