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Mutant Information

Mutant Name	FN435-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN435-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10090392	A-G	HOMO	INTERGENIC
SBS	Chr1	18845021	C-T	HOMO	INTERGENIC
SBS	Chr2	23455336	C-G	HET	INTRON
SBS	Chr2	24172889	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	30238496	C-T	HET	INTRON
SBS	Chr3	33857797	G-T	HET	INTERGENIC
SBS	Chr4	14507075	C-T	HOMO	INTERGENIC
SBS	Chr5	2961485	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05890
SBS	Chr6	5913473	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g11280
SBS	Chr6	6113169	C-T	HET	INTERGENIC
SBS	Chr6	29893767	G-T	HOMO	INTERGENIC
SBS	Chr7	14179411	G-A	HOMO	INTERGENIC
SBS	Chr8	5710640	T-A	HET	INTERGENIC
SBS	Chr9	4394288	T-C	HOMO	INTERGENIC
SBS	Chr9	12735207	G-A	HOMO	INTRON
SBS	Chr9	12735208	C-A	HOMO	INTRON
SBS	Chr10	4414311	T-G	HET	INTERGENIC
SBS	Chr12	19360825	C-A	HET	INTERGENIC
SBS	Chr12	24689162	C-G	HOMO	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	410680	410698	18
Deletion	Chr2	2594896	2594907	11
Deletion	Chr12	7584443	7584455	12
Deletion	Chr7	7732327	7732328	1
Deletion	Chr10	7940004	7940020	16
Deletion	Chr8	10773521	10773523	2
Deletion	Chr2	11085449	11085451	2	LOC_Os02g18970
Deletion	Chr4	13253797	13253800	3
Deletion	Chr1	14718379	14718401	22	LOC_Os01g25950
Deletion	Chr8	18075128	18075129	1	LOC_Os08g29490
Deletion	Chr11	18948573	18948574	1
Deletion	Chr3	21047537	21047539	2
Deletion	Chr7	25043697	25445636	401939	65
Deletion	Chr1	30733457	30733467	10
Deletion	Chr1	30950982	30950983	1
Deletion	Chr1	32795650	32795671	21
Deletion	Chr1	36139276	36139277	1	LOC_Os01g62440

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	18459403	18459403	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2044495	Chr4	12757397	LOC_Os10g04342
Translocation	Chr8	18080405	Chr6	8906180