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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11841335	C-T	HET	INTRON
SBS	Chr1	30252166	A-T	HET	INTRON
SBS	Chr1	38396289	C-T	HOMO	INTERGENIC
SBS	Chr10	2879960	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05710
SBS	Chr11	10421449	A-C	HOMO	INTRON
SBS	Chr11	12807232	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22342
SBS	Chr11	17209158	A-G	HET	UTR_5_PRIME
SBS	Chr12	18824882	G-A	HET	INTERGENIC
SBS	Chr12	1885608	A-G	HET	INTRON
SBS	Chr12	5286339	C-T	HET	INTERGENIC
SBS	Chr2	19433833	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g32720
SBS	Chr2	27172839	C-G	HET	INTERGENIC
SBS	Chr3	13395197	G-C	HET	INTERGENIC
SBS	Chr3	6617486	C-T	HET	INTERGENIC
SBS	Chr4	12520241	G-T	HET	INTRON
SBS	Chr4	14913863	C-T	HET	STOP_GAINED	LOC_Os04g25730
SBS	Chr4	14935725	T-C	HET	INTERGENIC
SBS	Chr4	1704244	T-A	HET	INTRON
SBS	Chr4	2985028	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05810
SBS	Chr4	34211889	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57510
SBS	Chr5	10461996	G-T	HOMO	INTERGENIC
SBS	Chr5	10461997	C-T	HOMO	INTERGENIC
SBS	Chr5	26847138	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46320
SBS	Chr6	10677023	G-T	HET	INTERGENIC
SBS	Chr6	13536942	C-T	HET	INTERGENIC
SBS	Chr6	15073735	G-A	HET	INTRON
SBS	Chr6	15397684	C-T	HET	INTERGENIC
SBS	Chr6	28786824	C-T	HET	INTERGENIC
SBS	Chr7	1181003	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g03100
SBS	Chr7	4363727	A-C	HET	INTERGENIC
SBS	Chr8	12972727	T-A	HET	INTERGENIC
SBS	Chr8	16285428	G-A	HET	INTERGENIC
SBS	Chr9	16343040	T-C	HET	INTERGENIC
SBS	Chr9	21339566	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g37000
SBS	Chr9	4931640	C-T	HET	INTRON
SBS	Chr9	5758995	C-T	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	345146	345152	6	LOC_Os03g01540
Deletion	Chr8	1288043	1288059	16	LOC_Os08g02960
Deletion	Chr12	4233440	4233441	1
Deletion	Chr6	5564113	5564153	40
Deletion	Chr9	6380058	6380059	1
Deletion	Chr8	7267712	7267713	1
Deletion	Chr8	8545561	8545562	1
Deletion	Chr10	9111421	9111422	1
Deletion	Chr4	9571723	9571724	1	LOC_Os04g17500
Deletion	Chr6	11098983	11098985	2
Deletion	Chr11	12111336	12111395	59
Deletion	Chr11	14471844	14471857	13
Deletion	Chr5	15442509	15442511	2
Deletion	Chr10	15519744	15519807	63
Deletion	Chr11	15715001	15770000	55000	6
Deletion	Chr11	15775001	15881000	106000	16
Deletion	Chr3	15835442	15835443	1
Deletion	Chr8	16933189	16933192	3	LOC_Os08g27800
Deletion	Chr12	16952123	16952182	59	LOC_Os12g28690
Deletion	Chr9	17189192	17189261	69
Deletion	Chr5	19646748	19646763	15	LOC_Os05g33430
Deletion	Chr2	20418781	20418783	2
Deletion	Chr9	22870321	22870345	24	LOC_Os09g39890
Deletion	Chr11	27289179	27289193	14
Deletion	Chr4	29249506	29249507	1
Deletion	Chr2	33133286	33133287	1
Deletion	Chr1	35404500	35404501	1	LOC_Os01g61160
Deletion	Chr1	42468540	42468610	70

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	23693715	23693717	3
Insertion	Chr12	24073238	24073239	2
Insertion	Chr12	50432	50432	1
Insertion	Chr3	10897436	10897437	2
Insertion	Chr3	17060881	17060881	1
Insertion	Chr4	10422845	10422845	1
Insertion	Chr6	25488478	25488478	1
Insertion	Chr7	7252105	7252105	1	LOC_Os07g12690
Insertion	Chr7	9704209	9704209	1
Insertion	Chr8	11039012	11039023	12
Insertion	Chr8	1332304	1332304	1
Insertion	Chr8	13388316	13388318	3
Insertion	Chr9	18082131	18082152	22
Insertion	Chr9	21898030	21898030	1
Insertion	Chr9	22006664	22006667	4
Insertion	Chr9	223262	223262	1	LOC_Os09g01260

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3080006	3080391
Inversion	Chr6	3080008	3080397
Inversion	Chr10	8780856	8780938
Inversion	Chr5	22517650	22517840
Inversion	Chr6	29217510	29217722	LOC_Os06g48320

No Translocation

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