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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12222797	A-T	HET	INTRON
SBS	Chr1	12829199	C-T	HET	STOP_GAINED	LOC_Os01g22830
SBS	Chr1	16933074	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g30980
SBS	Chr1	40082094	G-A	HET	INTRON
SBS	Chr1	856560	G-A	HET	INTERGENIC
SBS	Chr11	1470661	G-A	HET	INTERGENIC
SBS	Chr12	1439683	G-T	HOMO	INTRON
SBS	Chr12	21251667	C-T	HET	INTERGENIC
SBS	Chr12	665897	G-A	HOMO	INTERGENIC
SBS	Chr2	33409520	G-A	HET	INTERGENIC
SBS	Chr3	18565774	G-A	HOMO	INTERGENIC
SBS	Chr3	7684405	G-A	HOMO	INTERGENIC
SBS	Chr3	7684406	C-A	HOMO	INTERGENIC
SBS	Chr3	7684407	T-A	HOMO	INTERGENIC
SBS	Chr4	10162995	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18400
SBS	Chr4	10162996	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18400
SBS	Chr4	30428090	C-A	HOMO	INTERGENIC
SBS	Chr5	11689049	G-A	HET	INTERGENIC
SBS	Chr6	12584931	A-G	HET	INTERGENIC
SBS	Chr6	12584936	T-A	HET	INTERGENIC
SBS	Chr6	14560063	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24800
SBS	Chr7	20368633	G-T	HOMO	INTERGENIC
SBS	Chr8	12485792	C-A	HOMO	INTERGENIC
SBS	Chr8	21021354	A-G	HOMO	UTR_5_PRIME
SBS	Chr8	21593394	A-G	HOMO	INTERGENIC
SBS	Chr9	20401189	G-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	409937	409939	2	LOC_Os10g01610
Deletion	Chr2	1581591	1581596	5
Deletion	Chr2	2254425	2254428	3
Deletion	Chr2	2255401	2255402	1	LOC_Os02g04880
Deletion	Chr9	3355704	3355706	2
Deletion	Chr1	9147731	9147733	2
Deletion	Chr3	12810339	12810340	1
Deletion	Chr4	14673997	14674003	6
Deletion	Chr9	15333560	15337953	4393	LOC_Os09g25560
Deletion	Chr9	15619440	15619441	1
Deletion	Chr10	16592699	16593002	303	LOC_Os10g31660
Deletion	Chr2	19577666	19577669	3
Deletion	Chr6	20275837	20275844	7
Deletion	Chr4	24140482	24140487	5
Deletion	Chr7	24765069	24765079	10
Deletion	Chr11	25564001	25601000	37000	5
Deletion	Chr8	27234297	27234303	6
Deletion	Chr1	27487741	27487746	5
Deletion	Chr1	29290841	29290844	3
Deletion	Chr2	32073870	32073976	106

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15098184	15098185	2
Insertion	Chr1	24505789	24505790	2
Insertion	Chr1	42965165	42965166	2
Insertion	Chr3	25693036	25693041	6
Insertion	Chr4	28816807	28816807	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12583996	12831379
Inversion	Chr6	12584034	12831396

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	12222498	Chr3	25289528
Translocation	Chr12	20860551	Chr11	20609538
Translocation	Chr8	21038334	Chr2	1866616
Translocation	Chr8	21039094	Chr2	1866609
Translocation	Chr11	26925423	Chr8	1219483	LOC_Os08g02870

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