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Mutant Information

Mutant Name	FN4361-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4361-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21935454	A-C	HET	INTRON
SBS	Chr1	23910202	T-A	HET	INTERGENIC
SBS	Chr1	3352976	T-C	HET	SPLICE_SITE_REGION
SBS	Chr1	39655499	C-T	HET	UTR_3_PRIME
SBS	Chr1	4991849	T-C	HET	INTRON
SBS	Chr1	5541300	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	11588978	C-T	HET	START_GAINED
SBS	Chr10	8902593	C-T	HOMO	INTERGENIC
SBS	Chr11	10554170	T-C	HOMO	INTRON
SBS	Chr11	18279521	T-C	HOMO	INTERGENIC
SBS	Chr11	20208760	A-G	HET	INTERGENIC
SBS	Chr11	26836363	G-A	HET	INTERGENIC
SBS	Chr11	3031200	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06320
SBS	Chr11	6482224	A-G	HET	INTRON
SBS	Chr12	10034894	G-T	HET	INTERGENIC
SBS	Chr12	1895134	T-C	HOMO	INTERGENIC
SBS	Chr12	19292671	C-T	HET	INTERGENIC
SBS	Chr2	20960324	A-G	HET	INTRON
SBS	Chr2	8380150	T-C	HET	INTERGENIC
SBS	Chr3	18937621	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33100
SBS	Chr3	20375477	A-G	HET	UTR_3_PRIME
SBS	Chr3	2620816	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g05350
SBS	Chr3	30308680	G-T	HET	INTERGENIC
SBS	Chr3	32714603	T-C	HET	INTERGENIC
SBS	Chr3	34113266	G-A	HET	INTERGENIC
SBS	Chr4	10774085	C-A	HOMO	INTRON
SBS	Chr4	20249920	C-G	HET	UTR_5_PRIME
SBS	Chr4	32946109	T-C	HET	INTERGENIC
SBS	Chr5	10470796	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	20562427	A-T	HET	INTERGENIC
SBS	Chr5	5687528	A-T	HET	INTRON
SBS	Chr6	13092435	G-A	HET	INTERGENIC
SBS	Chr6	15066808	A-G	HET	INTRON
SBS	Chr6	29538523	A-T	HOMO	INTERGENIC
SBS	Chr6	7981894	G-T	HET	INTERGENIC
SBS	Chr7	1065828	A-G	HOMO	INTERGENIC
SBS	Chr7	14050482	A-C	HET	INTERGENIC
SBS	Chr7	653715	C-A	HET	INTERGENIC
SBS	Chr8	12596899	G-A	HET	INTERGENIC
SBS	Chr8	15398088	G-T	HET	UTR_3_PRIME
SBS	Chr8	15800674	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	7412658	A-T	HET	INTERGENIC
SBS	Chr8	9347035	C-T	HET	INTERGENIC
SBS	Chr9	12434254	G-A	HOMO	INTRON
SBS	Chr9	12434255	C-T	HOMO	INTRON
SBS	Chr9	3015359	C-A	HOMO	INTERGENIC
SBS	Chr9	4150602	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	444042	444049	7
Deletion	Chr11	577340	577370	30
Deletion	Chr11	577341	577371	30
Deletion	Chr4	762722	762723	1
Deletion	Chr12	1411772	1411780	8
Deletion	Chr4	2659342	2659343	1
Deletion	Chr6	3339681	3339710	29
Deletion	Chr2	7549001	7857000	308000	37
Deletion	Chr4	9357556	9357564	8
Deletion	Chr7	9454061	9454062	1
Deletion	Chr2	10940732	10940735	3
Deletion	Chr10	10975069	10975070	1
Deletion	Chr7	12534509	12534511	2
Deletion	Chr3	13478662	13478667	5
Deletion	Chr2	14529187	14529188	1
Deletion	Chr10	15195712	15195713	1
Deletion	Chr3	16770635	16770659	24
Deletion	Chr2	20227240	20227248	8
Deletion	Chr3	20810654	20810655	1	LOC_Os03g37500
Deletion	Chr12	23072575	23072581	6	LOC_Os12g37580
Deletion	Chr12	23770799	23770801	2
Deletion	Chr1	26108915	26108916	1	LOC_Os01g45960
Deletion	Chr1	27222274	27222374	100
Deletion	Chr3	27666960	27666966	6
Deletion	Chr5	29074293	29074294	1
Deletion	Chr2	29627397	29627405	8
Deletion	Chr4	30554673	30554674	1
Deletion	Chr1	38135345	38135347	2

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	39707258	39707258	1
Insertion	Chr11	25300646	25300646	1
Insertion	Chr12	18254371	18254373	3
Insertion	Chr12	502712	502713	2
Insertion	Chr2	10312626	10312626	1
Insertion	Chr2	12409833	12409847	15
Insertion	Chr3	1946886	1946888	3
Insertion	Chr4	4662585	4662585	1
Insertion	Chr5	15468651	15468651	1
Insertion	Chr6	19812107	19812107	1
Insertion	Chr8	5977117	5977131	15
Insertion	Chr9	15683344	15683345	2

No Inversion

No Translocation

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