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Mutant Information

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18928748	C-T	HET	INTRON
SBS	Chr1	4175274	A-T	HET	UTR_3_PRIME
SBS	Chr1	4176577	C-A	HET	INTRON
SBS	Chr10	13198943	C-T	HET	INTERGENIC
SBS	Chr11	3696955	G-A	HET	INTERGENIC
SBS	Chr12	24901766	C-T	HOMO	INTERGENIC
SBS	Chr2	15982493	T-A	HET	INTERGENIC
SBS	Chr2	31831370	C-T	HET	INTERGENIC
SBS	Chr3	14678786	G-A	HET	INTERGENIC
SBS	Chr4	22405067	A-T	HET	INTERGENIC
SBS	Chr4	32523044	C-T	HET	INTERGENIC
SBS	Chr5	27124286	T-A	HET	UTR_3_PRIME
SBS	Chr5	6884577	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	9074285	A-G	HET	INTRON
SBS	Chr8	1122569	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02690
SBS	Chr8	8222361	G-A	HOMO	INTERGENIC
SBS	Chr9	22575455	A-G	HOMO	INTERGENIC
SBS	Chr9	3772648	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07530

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	244412	244413	1
Deletion	Chr3	1355701	1355705	4
Deletion	Chr9	1621326	1621327	1
Deletion	Chr12	7340105	7340112	7
Deletion	Chr5	7756001	7783000	27000	3
Deletion	Chr6	7894842	7894866	24	LOC_Os06g14150
Deletion	Chr6	8400833	8400834	1
Deletion	Chr10	9015008	9015009	1
Deletion	Chr11	9868426	9868427	1
Deletion	Chr10	12291178	12291179	1	LOC_Os10g23990
Deletion	Chr1	13068399	13068400	1
Deletion	Chr8	13074533	13074534	1
Deletion	Chr9	13611555	13611556	1
Deletion	Chr6	14096219	14096223	4	LOC_Os06g24090
Deletion	Chr5	14228061	14228067	6
Deletion	Chr6	14429710	14429720	10
Deletion	Chr1	15105839	15105842	3	LOC_Os01g27080
Deletion	Chr8	15298518	15298519	1
Deletion	Chr4	18808271	18808272	1
Deletion	Chr12	20890183	20890184	1
Deletion	Chr6	21638223	21638226	3
Deletion	Chr12	22281357	22281358	1
Deletion	Chr11	25109167	25109168	1
Deletion	Chr6	26711992	26711993	1
Deletion	Chr11	27348454	27348455	1
Deletion	Chr2	30947497	30947502	5
Deletion	Chr3	30999908	30999909	1
Deletion	Chr3	35700987	35700988	1

Insertions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	1521373	1521378	6	LOC_Os01g03690
Insertion	Chr1	5619376	5619376	1
Insertion	Chr1	8892570	8892633	64
Insertion	Chr10	21084692	21084692	1
Insertion	Chr10	21228131	21228132	2	LOC_Os10g39720
Insertion	Chr11	15086416	15086419	4
Insertion	Chr11	15578811	15578816	6
Insertion	Chr11	21789950	21789950	1
Insertion	Chr11	26888499	26888545	47
Insertion	Chr11	4832801	4832803	3
Insertion	Chr12	15950111	15950112	2
Insertion	Chr12	20139484	20139485	2
Insertion	Chr12	23996885	23996886	2	LOC_Os12g39010
Insertion	Chr12	26633719	26633719	1
Insertion	Chr2	16997009	16997013	5
Insertion	Chr2	19888675	19888682	8
Insertion	Chr2	34223194	34223194	1
Insertion	Chr3	17318938	17318938	1
Insertion	Chr3	19579147	19579147	1
Insertion	Chr4	18036848	18036850	3
Insertion	Chr4	22669379	22669379	1
Insertion	Chr4	28550088	28550088	1
Insertion	Chr4	5453520	5453523	4	LOC_Os04g10100
Insertion	Chr4	6750120	6750140	21
Insertion	Chr5	21534591	21534591	1
Insertion	Chr5	25867602	25867602	1
Insertion	Chr5	26332707	26332707	1
Insertion	Chr5	2689821	2689821	1
Insertion	Chr6	10415866	10415869	4
Insertion	Chr6	4423546	4423596	51
Insertion	Chr6	5022045	5022045	1
Insertion	Chr6	525404	525404	1
Insertion	Chr7	23436136	23436136	1
Insertion	Chr8	13040413	13040416	4
Insertion	Chr8	13642396	13642396	1	LOC_Os08g22680
Insertion	Chr8	20261196	20261198	3
Insertion	Chr8	20261217	20261219	3
Insertion	Chr8	6443611	6443637	27
Insertion	Chr9	10751748	10751756	9	LOC_Os09g17580

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11816174	12152627
Inversion	Chr2	11816194	12152684
Inversion	Chr6	13650702	14372058	LOC_Os06g23390
Inversion	Chr8	19887296	19887467	LOC_Os08g32080

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	6382731	Chr7	6237475
Translocation	Chr6	6523353	Chr1	20238546
Translocation	Chr6	6528474	Chr1	20246781

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