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Mutant Information

Mutant Name	FN4367-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4367-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3039648	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	3039649	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g06450
SBS	Chr1	3039650	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g06450
SBS	Chr1	23576207	T-G	HOMO	UTR_3_PRIME
SBS	Chr1	37445938	C-T	HOMO	INTERGENIC
SBS	Chr1	40707749	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g70290
SBS	Chr2	3579220	G-A	HOMO	INTERGENIC
SBS	Chr2	17353438	C-T	HET	INTERGENIC
SBS	Chr2	24550782	T-A	HET	INTERGENIC
SBS	Chr2	26492785	T-A	HET	INTERGENIC
SBS	Chr2	28344731	A-T	HET	INTERGENIC
SBS	Chr2	28344732	G-T	HET	INTERGENIC
SBS	Chr2	28344738	G-A	HET	INTERGENIC
SBS	Chr2	31370721	G-A	HET	INTERGENIC
SBS	Chr2	32216610	C-T	HOMO	INTRON
SBS	Chr3	12081427	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g21180
SBS	Chr3	12387011	C-T	HET	INTERGENIC
SBS	Chr3	22438265	C-A	HOMO	INTERGENIC
SBS	Chr3	22439497	G-A	HOMO	INTERGENIC
SBS	Chr3	22439500	T-C	HOMO	INTERGENIC
SBS	Chr4	3233141	G-T	HET	SYNONYMOUS_CODING
SBS	Chr4	8991137	G-A	HOMO	INTERGENIC
SBS	Chr4	21418064	C-T	HET	INTRON
SBS	Chr5	4078587	G-C	HET	INTERGENIC
SBS	Chr5	5840586	G-A	HET	INTERGENIC
SBS	Chr5	26381899	A-T	HET	SPLICE_SITE_REGION
SBS	Chr6	85756	G-A	HET	INTERGENIC
SBS	Chr6	9884879	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	21176543	T-C	HOMO	INTERGENIC
SBS	Chr7	12474125	C-G	HET	INTERGENIC
SBS	Chr7	14277244	A-G	HET	INTRON
SBS	Chr7	26218083	G-A	HOMO	INTRON
SBS	Chr7	26218084	T-G	HOMO	INTRON
SBS	Chr7	27170024	G-A	HET	INTERGENIC
SBS	Chr8	4115814	T-C	HOMO	INTERGENIC
SBS	Chr8	18388396	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g29930
SBS	Chr9	2198992	G-A	HOMO	INTERGENIC
SBS	Chr9	5559972	C-T	HET	INTERGENIC
SBS	Chr9	12838371	T-A	HET	INTRON
SBS	Chr9	17544289	G-A	HET	INTERGENIC
SBS	Chr9	18593909	C-T	HET	INTERGENIC
SBS	Chr11	12896705	G-C	HET	INTERGENIC
SBS	Chr11	15131953	C-G	HET	INTRON
SBS	Chr12	12689944	G-C	HET	INTERGENIC
SBS	Chr12	23879459	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	461059	461061	2
Deletion	Chr2	1395842	1395843	1	LOC_Os02g03420
Deletion	Chr12	2670404	2670431	27
Deletion	Chr1	3119001	3132000	13000	3
Deletion	Chr3	7617965	7617967	2
Deletion	Chr6	8431540	8431546	6
Deletion	Chr2	8889147	8889148	1
Deletion	Chr4	9830248	9830249	1	LOC_Os04g17890
Deletion	Chr2	11294629	11294630	1	LOC_Os02g19330
Deletion	Chr7	13062332	13062333	1
Deletion	Chr11	14223087	14223090	3
Deletion	Chr1	14355208	14355210	2
Deletion	Chr4	14670440	14670473	33
Deletion	Chr2	15073924	15073925	1
Deletion	Chr8	21677115	21677143	28
Deletion	Chr3	25684184	25684185	1
Deletion	Chr12	26458989	26458991	2
Deletion	Chr8	26847326	26847328	2
Deletion	Chr1	32461689	32461690	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36285096	36285096	1
Insertion	Chr3	12144087	12144087	1
Insertion	Chr7	27980078	27980079	2
Insertion	Chr12	25174117	25174118	2
Insertion	Chr1	16890996	16890996	1
Insertion	Chr2	5518803	5518803	1
Insertion	Chr4	25375317	25375318	2
Insertion	Chr6	22348467	22348467	1
Insertion	Chr7	1308316	1308324	9
Insertion	Chr7	7456618	7456618	1
Insertion	Chr8	2455137	2455140	4
Insertion	Chr8	14654201	14654201	1	LOC_Os08g24280
Insertion	Chr9	10199407	10199407	1
Insertion	Chr11	11187246	11187246	1
Insertion	Chr12	11264955	11264956	2
Insertion	Chr12	11531678	11531678	1
Insertion	Chr12	23702161	23702161	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2096269	2096503	LOC_Os02g04670
Inversion	Chr9	12271527	12351042
Inversion	Chr1	38076663	38076800

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	18104032	Chr4	1508888	LOC_Os06g31160

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