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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8267742	A-G	HOMO	INTERGENIC
SBS	Chr10	10666906	A-G	HET	INTERGENIC
SBS	Chr10	3420401	T-C	HOMO	INTERGENIC
SBS	Chr10	5409568	G-T	HET	UTR_5_PRIME
SBS	Chr11	15397086	T-G	HET	INTERGENIC
SBS	Chr11	16504939	A-G	HET	INTERGENIC
SBS	Chr11	24289928	A-G	HET	INTERGENIC
SBS	Chr11	4209056	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	20883856	G-A	HET	INTERGENIC
SBS	Chr12	9704805	T-C	HET	INTERGENIC
SBS	Chr2	29018066	A-T	HET	INTERGENIC
SBS	Chr2	3440138	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06820
SBS	Chr3	12045625	T-C	HOMO	INTERGENIC
SBS	Chr3	21156684	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	7921281	A-G	HET	INTERGENIC
SBS	Chr4	10699558	C-T	HOMO	INTERGENIC
SBS	Chr4	10699561	C-T	HOMO	INTERGENIC
SBS	Chr4	10839113	A-T	HOMO	INTERGENIC
SBS	Chr4	18200296	T-C	HOMO	INTERGENIC
SBS	Chr4	19915744	A-G	HOMO	INTRON
SBS	Chr4	20889388	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	26140511	A-G	HET	INTERGENIC
SBS	Chr4	27699599	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g46720
SBS	Chr4	32411411	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	34990990	G-A	HOMO	INTERGENIC
SBS	Chr4	7746393	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13880
SBS	Chr4	9777903	G-A	HET	INTERGENIC
SBS	Chr5	21146378	G-T	HET	INTRON
SBS	Chr6	30448153	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g50300
SBS	Chr6	3350281	C-T	HET	INTERGENIC
SBS	Chr7	20923497	C-T	HET	INTERGENIC
SBS	Chr7	6989586	G-A	HET	INTERGENIC
SBS	Chr7	7057140	C-G	HET	INTERGENIC
SBS	Chr8	1106895	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02660
SBS	Chr8	17424546	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	12272382	C-T	HET	INTERGENIC
SBS	Chr9	8367950	G-A	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1247873	1247880	7
Deletion	Chr9	1611040	1611041	1
Deletion	Chr11	3683367	3683368	1
Deletion	Chr10	5104929	5104930	1
Deletion	Chr10	6761127	6761128	1
Deletion	Chr6	7638013	7638014	1
Deletion	Chr1	9011622	9011702	80
Deletion	Chr4	10236195	10236196	1
Deletion	Chr3	12107055	12107056	1	LOC_Os03g21210
Deletion	Chr10	12596845	12596846	1
Deletion	Chr7	13127262	13127263	1
Deletion	Chr1	13764976	13764984	8
Deletion	Chr2	15400075	15400082	7
Deletion	Chr1	17951264	17951269	5
Deletion	Chr11	18992213	18992214	1
Deletion	Chr4	19726916	19726923	7	LOC_Os04g32720
Deletion	Chr12	21795985	21795987	2
Deletion	Chr4	21837434	21837436	2
Deletion	Chr8	25604084	25604085	1
Deletion	Chr1	27467163	27467165	2
Deletion	Chr2	27681548	27681549	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11939127	11939128	2
Insertion	Chr1	13765892	13765892	1
Insertion	Chr10	144682	144682	1
Insertion	Chr10	5102960	5102960	1	LOC_Os10g09460
Insertion	Chr12	13964221	13964221	1
Insertion	Chr12	24369131	24369132	2
Insertion	Chr2	9244220	9244227	8
Insertion	Chr3	33802666	33802671	6
Insertion	Chr5	10373502	10373502	1
Insertion	Chr5	5186583	5186603	21
Insertion	Chr7	11612956	11612956	1
Insertion	Chr7	15466099	15466099	1
Insertion	Chr9	7381189	7381219	31

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	9082808	9082970
Inversion	Chr10	18489819	18489974
Inversion	Chr3	28031883	28032021

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	13432025	Chr1	9373921

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