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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10828062	C-T	HET	INTERGENIC
SBS	Chr1	21778308	G-A	HET	INTERGENIC
SBS	Chr1	22162313	G-A	HET	INTERGENIC
SBS	Chr11	13047121	C-T	HET	INTERGENIC
SBS	Chr11	1812725	G-A	HET	INTRON
SBS	Chr11	18773314	A-G	HOMO	INTERGENIC
SBS	Chr11	1986937	C-A	HET	INTRON
SBS	Chr11	7969526	G-A	HOMO	INTERGENIC
SBS	Chr12	14725240	T-C	HOMO	INTERGENIC
SBS	Chr12	18201695	G-C	HOMO	INTERGENIC
SBS	Chr2	22961258	G-A	HET	INTRON
SBS	Chr2	23508454	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	23785751	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	24938267	A-T	HET	INTERGENIC
SBS	Chr2	26542572	C-A	HET	INTERGENIC
SBS	Chr2	28556842	G-A	HET	INTERGENIC
SBS	Chr2	31601017	A-G	HET	INTERGENIC
SBS	Chr2	3731022	G-C	HET	UTR_3_PRIME
SBS	Chr4	10849948	C-T	HET	INTERGENIC
SBS	Chr4	17686708	C-T	HOMO	INTRON
SBS	Chr4	23599367	G-A	HET	INTERGENIC
SBS	Chr4	29285836	T-G	HOMO	INTRON
SBS	Chr4	5535478	T-C	HOMO	INTRON
SBS	Chr5	23498493	C-T	HET	INTERGENIC
SBS	Chr5	26856685	T-G	HET	UTR_3_PRIME
SBS	Chr5	27077439	G-A	HET	INTERGENIC
SBS	Chr6	11839194	G-A	HET	INTERGENIC
SBS	Chr6	5327073	G-T	HOMO	INTERGENIC
SBS	Chr6	5327074	A-T	HOMO	INTERGENIC
SBS	Chr6	6264554	C-T	HOMO	INTERGENIC
SBS	Chr6	6264556	G-A	HOMO	INTERGENIC
SBS	Chr7	6036808	T-A	HET	INTRON
SBS	Chr7	7575664	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13220
SBS	Chr8	109795	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01170
SBS	Chr8	4290468	G-A	HET	UTR_5_PRIME
SBS	Chr8	4781332	A-G	HET	INTRON
SBS	Chr8	5792986	G-A	HET	INTERGENIC
SBS	Chr9	11212013	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18260
SBS	Chr9	14631541	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g24570

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	771017	771018	1
Deletion	Chr11	790634	790641	7
Deletion	Chr2	1934754	1934755	1
Deletion	Chr11	3435471	3435472	1
Deletion	Chr12	3832468	3832470	2
Deletion	Chr11	3983618	3983619	1	LOC_Os11g07800
Deletion	Chr8	4293650	4293651	1
Deletion	Chr3	4336513	4336514	1
Deletion	Chr8	4754318	4754319	1
Deletion	Chr12	5344461	5344462	1
Deletion	Chr7	7013246	7013256	10
Deletion	Chr1	9295718	9295719	1
Deletion	Chr11	10079776	10079781	5
Deletion	Chr12	10729882	10729913	31
Deletion	Chr7	11613268	11613269	1
Deletion	Chr11	12942365	12942367	2	LOC_Os11g22530
Deletion	Chr8	14440092	14440094	2
Deletion	Chr2	15569108	15569109	1
Deletion	Chr12	16890531	16890546	15
Deletion	Chr11	18237388	18237389	1
Deletion	Chr11	20051423	20051429	6
Deletion	Chr4	20933866	20933901	35
Deletion	Chr6	23246944	23246964	20
Deletion	Chr8	27348688	27348689	1
Deletion	Chr7	27373654	27373655	1
Deletion	Chr6	29012517	29012611	94
Deletion	Chr6	30475783	30475784	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21313840	21313842	3
Insertion	Chr12	25291482	25291543	62
Insertion	Chr12	7179152	7179152	1
Insertion	Chr2	16115627	16115627	1
Insertion	Chr3	4097903	4097903	1
Insertion	Chr4	2886180	2886181	2
Insertion	Chr5	7413931	7414009	79
Insertion	Chr6	1233194	1233194	1
Insertion	Chr6	14002247	14002247	1
Insertion	Chr6	9583187	9583187	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8145971	8527595
Inversion	Chr12	9863157	10075193
Inversion	Chr8	10494066	11482624	LOC_Os08g17140
Inversion	Chr8	10494067	11482625	LOC_Os08g17140
Inversion	Chr4	17788913	17789068
Inversion	Chr1	29113165	29113297	LOC_Os01g50690

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2253482	Chr4	1081454
Translocation	Chr12	12101166	Chr1	17417127	LOC_Os01g21600
Translocation	Chr10	15534760	Chr1	23827307
Translocation	Chr6	22360143	Chr1	26412731
Translocation	Chr12	22853357	Chr1	15881136

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