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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13924323	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24750
SBS	Chr1	35662933	G-A	HET	INTRON
SBS	Chr1	35662934	A-T	HET	INTRON
SBS	Chr1	9581358	T-A	HET	INTERGENIC
SBS	Chr10	11630618	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22460
SBS	Chr10	20064541	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	6519796	G-A	HET	INTRON
SBS	Chr12	8916227	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15600
SBS	Chr2	7779246	C-A	HET	INTERGENIC
SBS	Chr3	12789767	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22320
SBS	Chr3	16194474	G-T	HET	INTERGENIC
SBS	Chr3	18260277	A-C	HET	INTERGENIC
SBS	Chr4	13532525	A-C	HOMO	INTERGENIC
SBS	Chr4	9781703	C-G	HOMO	INTRON
SBS	Chr5	12079742	G-A	HOMO	INTERGENIC
SBS	Chr5	12079743	T-G	HOMO	INTERGENIC
SBS	Chr5	18942714	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g32440
SBS	Chr6	24271114	C-T	HET	INTRON
SBS	Chr7	17349628	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g29550
SBS	Chr8	24505321	A-G	HOMO	INTRON
SBS	Chr8	4230500	G-A	HET	INTERGENIC
SBS	Chr8	8278568	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13860
SBS	Chr9	1032118	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g02490
SBS	Chr9	18671126	G-C	HET	UTR_3_PRIME

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	707764	707765	1
Deletion	Chr12	730875	730887	12
Deletion	Chr2	2273031	2273034	3	LOC_Os02g04910
Deletion	Chr1	2718788	2718789	1
Deletion	Chr10	3511001	4065000	554000	73
Deletion	Chr12	3538441	3538442	1
Deletion	Chr3	3545625	3545626	1
Deletion	Chr11	5982724	5982727	3	LOC_Os11g10860
Deletion	Chr5	7281389	7281390	1
Deletion	Chr8	7861792	7861809	17
Deletion	Chr3	8618704	8618705	1	LOC_Os03g15620
Deletion	Chr5	8765184	8765188	4
Deletion	Chr4	9452182	9452184	2
Deletion	Chr4	11522832	11522833	1
Deletion	Chr6	15431496	15431497	1
Deletion	Chr6	16125664	16125674	10
Deletion	Chr11	17987206	17987207	1
Deletion	Chr11	20220875	20220876	1
Deletion	Chr9	21429585	21429586	1
Deletion	Chr3	21571146	21571147	1
Deletion	Chr10	22218504	22218505	1
Deletion	Chr11	22647287	22647292	5
Deletion	Chr1	22704711	22704712	1
Deletion	Chr1	23918359	23918366	7
Deletion	Chr1	25296061	25296152	91
Deletion	Chr12	26436606	26436607	1
Deletion	Chr4	27007832	27007834	2
Deletion	Chr12	27138387	27138388	1
Deletion	Chr6	27831435	27831437	2
Deletion	Chr2	29860832	29860835	3
Deletion	Chr3	36068408	36068409	1
Deletion	Chr1	42765131	42765149	18

Insertions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10535949	10535949	1
Insertion	Chr1	3021737	3021746	10
Insertion	Chr10	16597103	16597103	1
Insertion	Chr11	8869793	8869793	1
Insertion	Chr12	11913766	11913767	2
Insertion	Chr12	17542069	17542069	1
Insertion	Chr12	3105418	3105418	1
Insertion	Chr2	16273513	16273554	42
Insertion	Chr2	19722828	19722834	7
Insertion	Chr2	29417037	29417037	1
Insertion	Chr2	32724924	32724925	2
Insertion	Chr2	7040501	7040501	1	LOC_Os02g13210
Insertion	Chr2	7523640	7523640	1
Insertion	Chr3	28140175	28140175	1
Insertion	Chr3	35720619	35720619	1
Insertion	Chr3	36309216	36309217	2
Insertion	Chr3	9059126	9059128	3
Insertion	Chr4	33500758	33500759	2
Insertion	Chr5	13350245	13350245	1
Insertion	Chr6	9006320	9006320	1
Insertion	Chr7	6931447	6931448	2
Insertion	Chr8	27255845	27255845	1	LOC_Os08g43110
Insertion	Chr8	28344486	28344486	1
Insertion	Chr8	8017385	8017394	10
Insertion	Chr9	4919476	4919476	1
Insertion	Chr9	8441972	8441975	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6039940	6040015	LOC_Os07g11000
Inversion	Chr2	21983334	21983624	LOC_Os02g36390

No Translocation

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