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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2352795	C-A	HET	INTRON
SBS	Chr1	5907055	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11054
SBS	Chr1	28351078	C-A	HOMO	INTERGENIC
SBS	Chr2	19605954	T-A	HOMO	INTERGENIC
SBS	Chr2	32635123	T-A	HET	INTERGENIC
SBS	Chr3	5776600	T-C	HET	INTERGENIC
SBS	Chr3	5776605	T-C	HET	INTERGENIC
SBS	Chr3	5776613	A-T	HET	INTERGENIC
SBS	Chr3	19097787	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	25502525	G-T	HET	INTERGENIC
SBS	Chr3	27348174	C-T	HET	INTRON
SBS	Chr4	11595927	C-G	HET	INTRON
SBS	Chr4	21415473	A-T	HET	INTRON
SBS	Chr4	22673090	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g38090
SBS	Chr4	27857503	G-A	HOMO	INTERGENIC
SBS	Chr5	24392801	C-T	HOMO	INTRON
SBS	Chr6	10628973	T-A	HET	INTERGENIC
SBS	Chr6	13082508	T-A	HET	SYNONYMOUS_CODING
SBS	Chr6	26964117	T-A	HET	INTERGENIC
SBS	Chr6	26964118	G-A	HET	INTERGENIC
SBS	Chr7	22970618	A-G	HOMO	INTRON
SBS	Chr7	24599700	T-A	HET	INTERGENIC
SBS	Chr8	8253819	C-T	HET	INTERGENIC
SBS	Chr8	10166822	A-G	HET	INTERGENIC
SBS	Chr8	17399705	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28500
SBS	Chr8	26960215	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42650
SBS	Chr9	17495224	G-C	HET	STOP_GAINED	LOC_Os09g28800
SBS	Chr9	22837421	C-T	HET	INTRON
SBS	Chr10	10091489	A-T	HET	INTRON
SBS	Chr10	12400216	A-C	HET	INTERGENIC
SBS	Chr11	2285239	C-T	HET	INTERGENIC
SBS	Chr11	9245966	G-A	HET	INTRON
SBS	Chr11	12738525	C-T	HET	INTERGENIC
SBS	Chr11	16814499	G-A	HET	INTERGENIC
SBS	Chr12	21660384	A-T	HOMO	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1658398	1658408	10
Deletion	Chr5	1712671	1712677	6
Deletion	Chr5	1824596	1824597	1
Deletion	Chr1	3085904	3085921	17	LOC_Os01g06550
Deletion	Chr12	3242061	3242062	1
Deletion	Chr11	5143184	5148538	5354	LOC_Os11g09630
Deletion	Chr6	5637116	5637117	1	LOC_Os06g10800
Deletion	Chr5	6475245	6475246	1
Deletion	Chr7	6863540	6863545	5
Deletion	Chr7	6951746	6951753	7	LOC_Os07g12320
Deletion	Chr1	8173399	8173400	1
Deletion	Chr1	8414990	8414993	3
Deletion	Chr3	10195624	10195625	1	LOC_Os03g18190
Deletion	Chr8	13122459	13122468	9
Deletion	Chr12	13794138	13794139	1	LOC_Os12g24200
Deletion	Chr3	13801216	13801218	2
Deletion	Chr10	15558452	15558455	3
Deletion	Chr5	15725764	15725769	5
Deletion	Chr10	15912065	15912066	1
Deletion	Chr10	16071001	16122000	51000	7
Deletion	Chr7	17057367	17057370	3
Deletion	Chr9	21617891	21617897	6
Deletion	Chr2	22469891	22469921	30
Deletion	Chr2	22974326	22974335	9	LOC_Os02g38020
Deletion	Chr3	24168123	24168496	373
Deletion	Chr1	25186738	25186744	6
Deletion	Chr12	26044774	26044779	5	LOC_Os12g42000
Deletion	Chr3	26054591	26054605	14
Deletion	Chr8	26259092	26259094	2
Deletion	Chr3	27385193	27385299	106	LOC_Os03g48140
Deletion	Chr3	28731224	28731227	3	LOC_Os03g50350
Deletion	Chr1	28808603	28808624	21	LOC_Os01g50140
Deletion	Chr5	29061533	29061537	4	LOC_Os05g50690
Deletion	Chr2	32535804	32535820	16	LOC_Os02g53150

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	9495466	9495467	2
Insertion	Chr9	20166224	20166225	2
Insertion	Chr1	17086521	17086521	1
Insertion	Chr3	21038827	21038827	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9912609	10204270	LOC_Os11g18130
Inversion	Chr11	9912632	10204298	LOC_Os11g18130

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9912596	Chr3	24168493
Translocation	Chr11	10204263	Chr3	24168135	LOC_Os11g18130
Translocation	Chr10	11338810	Chr6	10850161	2

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