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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11019646	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19460
SBS	Chr1	24298189	C-T	HET	INTRON
SBS	Chr1	36133473	T-C	HOMO	INTERGENIC
SBS	Chr11	20096232	A-C	HET	INTERGENIC
SBS	Chr11	7218197	C-T	HET	INTERGENIC
SBS	Chr11	8079720	G-T	HET	INTERGENIC
SBS	Chr12	14724329	C-T	HOMO	INTERGENIC
SBS	Chr12	753757	T-C	HOMO	INTERGENIC
SBS	Chr2	13369808	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	290500	T-G	HET	INTRON
SBS	Chr2	8839446	A-G	HET	INTERGENIC
SBS	Chr3	24227943	T-C	HET	INTERGENIC
SBS	Chr3	3471529	A-C	HOMO	UTR_3_PRIME
SBS	Chr4	30574718	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51610
SBS	Chr4	33018955	C-A	HET	INTERGENIC
SBS	Chr5	23777631	C-T	HET	INTERGENIC
SBS	Chr5	3120294	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g06200
SBS	Chr5	4764593	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g08694
SBS	Chr5	4847804	C-A	HET	INTERGENIC
SBS	Chr6	21306485	G-A	HOMO	INTERGENIC
SBS	Chr6	23766802	A-G	HOMO	INTERGENIC
SBS	Chr7	27255344	T-C	HET	INTERGENIC
SBS	Chr8	21133877	C-G	HET	INTERGENIC
SBS	Chr8	4378164	T-C	HET	INTERGENIC
SBS	Chr9	13325319	T-C	HET	INTRON
SBS	Chr9	5421620	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g09960
SBS	Chr9	5427489	G-A	HOMO	INTRON
SBS	Chr9	8524676	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14430

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	939350	939355	5
Deletion	Chr5	2217664	2217676	12	LOC_Os05g04690
Deletion	Chr3	2710226	2710229	3
Deletion	Chr8	2970804	2970809	5
Deletion	Chr10	3368119	3368126	7	LOC_Os10g06550
Deletion	Chr3	3503229	3503230	1	LOC_Os03g06910
Deletion	Chr10	4430060	4430061	1
Deletion	Chr1	4492102	4492103	1
Deletion	Chr12	5447822	5447823	1
Deletion	Chr9	5863401	5863403	2
Deletion	Chr10	7793656	7793657	1
Deletion	Chr9	9361118	9361198	80
Deletion	Chr1	10683001	10725000	42000	9
Deletion	Chr1	10728001	10789000	61000	10
Deletion	Chr1	10794001	10819000	25000	4
Deletion	Chr7	13604503	13604504	1
Deletion	Chr1	15223212	15223213	1	LOC_Os01g27280
Deletion	Chr12	16044066	16044067	1
Deletion	Chr3	17663190	17663191	1
Deletion	Chr3	17766487	17766488	1	LOC_Os03g31200
Deletion	Chr7	18316285	18316286	1
Deletion	Chr5	18649456	18649457	1
Deletion	Chr11	20062534	20062540	6
Deletion	Chr12	20224514	20224515	1
Deletion	Chr6	21053432	21053434	2
Deletion	Chr4	21195198	21195199	1
Deletion	Chr11	21224505	21224507	2
Deletion	Chr1	22378139	22378140	1
Deletion	Chr8	23421995	23421996	1
Deletion	Chr11	26689768	26689769	1	LOC_Os11g44190
Deletion	Chr7	26827508	26827509	1
Deletion	Chr8	27913160	27913161	1
Deletion	Chr1	31773962	31773963	1
Deletion	Chr3	32638902	32638908	6
Deletion	Chr2	34714570	34714571	1
Deletion	Chr4	35063028	35063029	1
Deletion	Chr3	36327826	36327827	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4211128	4211130	3	LOC_Os01g08510
Insertion	Chr11	23250833	23250840	8
Insertion	Chr12	11626674	11626674	1
Insertion	Chr2	19065392	19065392	1
Insertion	Chr2	32948121	32948121	1
Insertion	Chr3	11659449	11659449	1
Insertion	Chr3	35012181	35012181	1	LOC_Os03g61760
Insertion	Chr4	33279089	33279089	1
Insertion	Chr6	30919679	30919679	1
Insertion	Chr7	16854379	16854386	8
Insertion	Chr7	24850982	24851044	63
Insertion	Chr8	11235069	11235069	1
Insertion	Chr9	7872350	7872350	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5979718	5979976
Inversion	Chr6	28833620	28833692

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6904424	Chr1	11767719
Translocation	Chr5	6904433	Chr1	11768118
Translocation	Chr7	24388510	Chr6	16837848	LOC_Os06g40910

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