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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5986547	C-T	HET	INTERGENIC
SBS	Chr10	17603407	G-T	HOMO	INTERGENIC
SBS	Chr10	20639442	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	22802378	G-T	HET	INTERGENIC
SBS	Chr11	11179822	G-A	HOMO	INTERGENIC
SBS	Chr11	11743295	C-T	HET	INTERGENIC
SBS	Chr11	18497756	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	18497757	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g31630
SBS	Chr11	219416	A-C	HET	INTERGENIC
SBS	Chr11	28888665	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47890
SBS	Chr12	10815674	C-T	HET	INTRON
SBS	Chr12	12978280	C-T	HET	INTERGENIC
SBS	Chr12	14225872	T-C	HET	INTERGENIC
SBS	Chr12	20408827	G-T	HOMO	INTERGENIC
SBS	Chr12	27249519	T-C	HET	INTERGENIC
SBS	Chr12	8199267	C-T	HET	INTRON
SBS	Chr2	17333187	A-G	HET	INTRON
SBS	Chr2	20255043	G-A	HOMO	INTERGENIC
SBS	Chr2	26392004	C-T	HOMO	INTERGENIC
SBS	Chr3	20119275	C-T	HET	INTERGENIC
SBS	Chr3	26802161	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47410
SBS	Chr3	26989518	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47650
SBS	Chr4	15853360	G-C	HOMO	UTR_5_PRIME
SBS	Chr4	4090466	T-C	HET	INTRON
SBS	Chr5	10535690	A-T	HET	INTERGENIC
SBS	Chr5	5592478	A-C	HET	INTERGENIC
SBS	Chr5	9642298	C-T	HET	INTERGENIC
SBS	Chr6	13321032	T-C	HET	INTERGENIC
SBS	Chr6	18099203	C-T	HET	INTERGENIC
SBS	Chr6	21112784	G-A	HOMO	INTERGENIC
SBS	Chr6	5243809	A-G	HET	INTERGENIC
SBS	Chr7	15139695	G-T	HET	INTERGENIC
SBS	Chr7	18226425	G-A	HOMO	INTRON
SBS	Chr7	25588774	T-A	HOMO	INTERGENIC
SBS	Chr7	29385019	C-T	HET	UTR_5_PRIME
SBS	Chr7	7494048	G-T	HET	INTRON
SBS	Chr8	13149179	G-A	HET	INTRON
SBS	Chr9	13408479	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g22150
SBS	Chr9	19131612	C-G	HOMO	INTERGENIC
SBS	Chr9	8362256	G-A	HOMO	INTERGENIC
SBS	Chr9	89146	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g01060

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	430620	430622	2
Deletion	Chr8	1867956	1867958	2	LOC_Os08g03930
Deletion	Chr6	2826123	2826135	12
Deletion	Chr3	9118174	9118214	40
Deletion	Chr7	9239980	9239981	1
Deletion	Chr1	10186488	10186490	2
Deletion	Chr9	15568341	15568345	4
Deletion	Chr9	16013679	16013688	9
Deletion	Chr12	16443635	16443636	1
Deletion	Chr10	17008001	17056000	48000	6
Deletion	Chr10	17017169	17017171	2
Deletion	Chr3	17160386	17160395	9
Deletion	Chr8	17319001	17489000	170000	21
Deletion	Chr10	17442001	17625000	183000	21
Deletion	Chr8	17497001	17542000	45000	7
Deletion	Chr8	17550001	17709000	159000	24
Deletion	Chr1	18915877	18915879	2
Deletion	Chr8	20073111	20073115	4
Deletion	Chr11	21524078	21524081	3
Deletion	Chr12	21979335	21979388	53
Deletion	Chr9	21985852	21985853	1
Deletion	Chr12	22586453	22586455	2
Deletion	Chr8	24915172	24915178	6
Deletion	Chr1	25420001	25458000	38000	7
Deletion	Chr1	25514001	25532000	18000	3
Deletion	Chr1	25703001	26013000	310000	49
Deletion	Chr2	25921001	25979000	58000	9
Deletion	Chr1	26134001	26207000	73000	10
Deletion	Chr1	26379274	26379275	1
Deletion	Chr1	26610149	26610150	1
Deletion	Chr1	26679001	26750000	71000	10
Deletion	Chr4	29468001	29479000	11000	LOC_Os04g49380
Deletion	Chr3	31936839	31936840	1
Deletion	Chr2	32367414	32367420	6

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11552138	11552138	1	LOC_Os01g20740
Insertion	Chr1	38203564	38203567	4
Insertion	Chr12	26070973	26070973	1
Insertion	Chr2	22701818	22701843	26
Insertion	Chr2	22787332	22787332	1
Insertion	Chr4	8611649	8611649	1
Insertion	Chr5	12952156	12952156	1
Insertion	Chr5	1336836	1336836	1
Insertion	Chr5	8835314	8835314	1
Insertion	Chr6	4290180	4290180	1
Insertion	Chr8	102365	102368	4
Insertion	Chr8	9831785	9831785	1
Insertion	Chr9	16173455	16173455	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1483449	1483710
Inversion	Chr9	16050924	16051105	LOC_Os09g26550
Inversion	Chr7	22955946	22956070	LOC_Os07g38270
Inversion	Chr1	25419484	25702846
Inversion	Chr1	39390117	39390326

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14791364	Chr1	25725454
Translocation	Chr9	14791736	Chr8	17313139
Translocation	Chr8	24363151	Chr2	1947526
Translocation	Chr5	27610094	Chr1	25420715
Translocation	Chr5	27610105	Chr1	25419529	LOC_Os05g48170

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