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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17771774	A-T	HET	INTERGENIC
SBS	Chr1	34078564	C-T	HET	INTERGENIC
SBS	Chr1	41458085	C-T	HET	INTRON
SBS	Chr1	4331252	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	6550299	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	8505268	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	23037745	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g42710
SBS	Chr11	15557894	G-A	HET	INTERGENIC
SBS	Chr11	2646540	T-C	HET	INTERGENIC
SBS	Chr11	9760715	T-C	HOMO	INTERGENIC
SBS	Chr12	6624129	C-A	HET	INTRON
SBS	Chr2	14257677	C-T	HET	INTERGENIC
SBS	Chr2	15575652	C-T	HET	INTERGENIC
SBS	Chr2	3408865	C-T	HET	UTR_3_PRIME
SBS	Chr2	4531685	C-A	HET	INTERGENIC
SBS	Chr3	1355026	T-A	HET	INTERGENIC
SBS	Chr3	16618534	C-G	HET	INTERGENIC
SBS	Chr3	20457145	A-G	HET	INTERGENIC
SBS	Chr3	27268382	G-A	HET	INTRON
SBS	Chr3	5478091	G-A	HET	INTERGENIC
SBS	Chr3	6892611	C-T	HET	INTERGENIC
SBS	Chr4	3904158	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07330
SBS	Chr4	6660236	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12110
SBS	Chr4	6660237	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	6660261	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	11615586	C-T	HOMO	INTERGENIC
SBS	Chr5	22776123	G-A	HOMO	UTR_3_PRIME
SBS	Chr7	10643327	G-A	HET	INTERGENIC
SBS	Chr7	11225208	G-A	HET	UTR_5_PRIME
SBS	Chr7	11613180	T-A	HET	INTERGENIC
SBS	Chr7	17447113	A-T	HET	INTRON

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	314092	314094	2
Deletion	Chr7	420607	420608	1
Deletion	Chr5	1221739	1221742	3
Deletion	Chr6	1369799	1369801	2
Deletion	Chr8	2488402	2488461	59
Deletion	Chr6	2556750	2556751	1
Deletion	Chr11	3001998	3001999	1
Deletion	Chr4	3100936	3100939	3
Deletion	Chr7	3146407	3146461	54
Deletion	Chr6	6138932	6138933	1
Deletion	Chr7	6154911	6154933	22
Deletion	Chr8	9651378	9651380	2	LOC_Os08g15870
Deletion	Chr6	10622549	10622714	165
Deletion	Chr12	11141520	11141604	84
Deletion	Chr8	12526087	12526088	1
Deletion	Chr7	13797785	13797786	1
Deletion	Chr1	13873512	13873513	1	LOC_Os01g24630
Deletion	Chr10	15257672	15257673	1
Deletion	Chr1	16975172	16975173	1
Deletion	Chr5	17562409	17562439	30
Deletion	Chr9	18632402	18632403	1
Deletion	Chr1	20243271	20243273	2
Deletion	Chr10	20803854	20803855	1
Deletion	Chr7	24223003	24223004	1
Deletion	Chr2	25967668	25967669	1
Deletion	Chr12	27027671	27027721	50
Deletion	Chr12	27233424	27233426	2
Deletion	Chr2	27351179	27351180	1
Deletion	Chr4	30357264	30357265	1
Deletion	Chr4	30841115	30841116	1
Deletion	Chr1	34783444	34783445	1
Deletion	Chr1	38207093	38207097	4

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38293517	38293517	1
Insertion	Chr10	2445796	2445859	64
Insertion	Chr11	24516968	24516970	3
Insertion	Chr12	11241698	11241698	1
Insertion	Chr3	2486546	2486546	1
Insertion	Chr4	18682702	18682706	5
Insertion	Chr4	23193014	23193014	1
Insertion	Chr4	27474105	27474105	1
Insertion	Chr4	5897746	5897746	1
Insertion	Chr5	18751624	18751625	2
Insertion	Chr5	29411335	29411376	42
Insertion	Chr5	9512052	9512054	3
Insertion	Chr6	22189039	22189115	77
Insertion	Chr7	16244547	16244549	3
Insertion	Chr7	224976	224976	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	33518179	33518390

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5113843	Chr4	2989432

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