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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1271085	C-T	HET	INTERGENIC
SBS	Chr1	13070785	C-T	HET	INTERGENIC
SBS	Chr1	19887329	C-G	HET	INTERGENIC
SBS	Chr1	20998790	C-T	HET	INTERGENIC
SBS	Chr1	22213372	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	40825122	G-A	HET	INTERGENIC
SBS	Chr1	8279762	A-T	HET	INTRON
SBS	Chr10	11473176	G-C	HOMO	INTERGENIC
SBS	Chr10	20109970	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g37570
SBS	Chr11	21227142	G-A	HET	INTERGENIC
SBS	Chr11	9676344	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g17360
SBS	Chr12	11641737	G-A	HET	INTERGENIC
SBS	Chr12	12970050	C-T	HET	INTERGENIC
SBS	Chr12	15047973	A-G	HET	INTERGENIC
SBS	Chr12	2183457	C-T	HOMO	INTERGENIC
SBS	Chr12	23011948	T-C	HET	INTRON
SBS	Chr2	18837655	C-T	HET	INTERGENIC
SBS	Chr2	6718073	C-T	HOMO	INTRON
SBS	Chr2	6769724	C-A	HOMO	INTERGENIC
SBS	Chr2	7275411	A-G	HOMO	INTRON
SBS	Chr3	14895238	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	16202631	G-A	HET	INTERGENIC
SBS	Chr3	17571518	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	17571519	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30830
SBS	Chr3	21303837	G-T	HET	UTR_3_PRIME
SBS	Chr3	3177011	G-T	HET	INTERGENIC
SBS	Chr3	3177012	C-T	HET	INTERGENIC
SBS	Chr3	36203646	C-G	HET	INTERGENIC
SBS	Chr3	8617634	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15620
SBS	Chr3	9685453	A-G	HET	INTRON
SBS	Chr4	1722144	A-G	HET	INTERGENIC
SBS	Chr4	9720446	T-A	HET	INTRON
SBS	Chr4	9720449	G-A	HET	INTRON
SBS	Chr5	6308021	T-C	HET	INTERGENIC
SBS	Chr5	8672466	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15290
SBS	Chr7	3614834	T-A	HET	INTERGENIC
SBS	Chr8	16667029	G-A	HOMO	INTERGENIC
SBS	Chr8	27832027	G-A	HET	INTERGENIC
SBS	Chr8	6317439	C-G	HET	INTERGENIC
SBS	Chr9	4734936	G-A	HOMO	INTERGENIC
SBS	Chr9	7972352	G-A	HET	INTERGENIC
SBS	Chr9	8163400	G-A	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	346730	346731	1
Deletion	Chr6	718495	718496	1
Deletion	Chr11	1920689	1920690	1
Deletion	Chr10	3272816	3272817	1
Deletion	Chr3	3309001	3369000	60000	8
Deletion	Chr6	4833588	4833598	10
Deletion	Chr12	5370558	5370559	1
Deletion	Chr7	7137997	7137999	2
Deletion	Chr12	9296439	9296440	1
Deletion	Chr9	9965983	9965984	1
Deletion	Chr4	11199352	11199353	1
Deletion	Chr1	11489605	11489606	1
Deletion	Chr4	12133001	12260000	127000	18
Deletion	Chr4	12271001	12345000	74000	12
Deletion	Chr4	12910001	13107000	197000	28
Deletion	Chr10	15136621	15136632	11
Deletion	Chr8	15504428	15504429	1
Deletion	Chr12	15540968	15540969	1
Deletion	Chr5	15712436	15712457	21	LOC_Os05g27020
Deletion	Chr9	16167452	16167453	1
Deletion	Chr7	16285725	16285731	6
Deletion	Chr12	16581631	16581633	2
Deletion	Chr9	17711843	17711845	2
Deletion	Chr5	18974415	18974443	28	LOC_Os05g32480
Deletion	Chr2	23475392	23475481	89
Deletion	Chr3	23658353	23658362	9
Deletion	Chr4	25943301	25943302	1
Deletion	Chr7	27685037	27685038	1
Deletion	Chr6	29130256	29130263	7
Deletion	Chr6	29155834	29155840	6
Deletion	Chr4	30753349	30753350	1
Deletion	Chr1	32690993	32690994	1
Deletion	Chr1	38757171	38757172	1
Deletion	Chr1	39989989	39989991	2

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40308970	40308970	1	LOC_Os01g69810
Insertion	Chr10	16148386	16148386	1
Insertion	Chr10	2478001	2478037	37
Insertion	Chr10	3591300	3591334	35
Insertion	Chr11	14505114	14505114	1
Insertion	Chr11	8175197	8175202	6
Insertion	Chr2	18676048	18676048	1
Insertion	Chr2	23462455	23462455	1
Insertion	Chr3	7732517	7732517	1
Insertion	Chr5	10754448	10754501	54
Insertion	Chr5	23126717	23126718	2
Insertion	Chr6	3819118	3819118	1	LOC_Os06g07850
Insertion	Chr6	4830624	4830624	1
Insertion	Chr6	9882072	9882078	7	LOC_Os06g17040
Insertion	Chr7	12585262	12585262	1
Insertion	Chr8	9136215	9136220	6
Insertion	Chr9	3012431	3012431	1
Insertion	Chr9	7017568	7017568	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8472680	8472836	LOC_Os04g15580
Inversion	Chr5	9589898	9590025
Inversion	Chr11	10983349	10983453
Inversion	Chr10	13826572	13826716
Inversion	Chr1	16539575	16539884
Inversion	Chr1	30207673	30208102

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4443487	Chr8	15117194	LOC_Os08g07890
Translocation	Chr12	4447529	Chr4	27074184
Translocation	Chr4	9605634	Chr3	3307188	LOC_Os03g17240
Translocation	Chr5	16313876	Chr3	3306349
Translocation	Chr4	27074179	Chr2	33553003

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