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Mutant Information

Mutant Name	FN4387-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4387-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5386586	T-C	HET	INTERGENIC
SBS	Chr1	20259582	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36500
SBS	Chr1	22974517	G-A	HOMO	INTERGENIC
SBS	Chr1	24362495	A-G	HOMO	INTERGENIC
SBS	Chr1	25943273	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45690
SBS	Chr2	7092735	T-C	HOMO	INTERGENIC
SBS	Chr2	12054792	C-T	HET	INTERGENIC
SBS	Chr2	14660365	C-A	HET	INTERGENIC
SBS	Chr2	19355343	C-T	HET	INTERGENIC
SBS	Chr2	35867711	C-T	HET	STOP_GAINED	LOC_Os02g58710
SBS	Chr3	14763819	C-A	HET	INTRON
SBS	Chr3	29107467	A-T	HOMO	INTERGENIC
SBS	Chr3	29914889	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g52100
SBS	Chr4	6184658	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11330
SBS	Chr4	9700372	C-T	HET	INTRON
SBS	Chr4	10279765	T-C	HET	STOP_LOST	LOC_Os04g18600
SBS	Chr4	23438583	A-G	HET	INTERGENIC
SBS	Chr4	29335956	C-T	HET	INTRON
SBS	Chr5	7685773	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g13830
SBS	Chr5	10162662	C-T	HET	INTERGENIC
SBS	Chr5	20195354	G-A	HET	INTERGENIC
SBS	Chr5	21340022	G-C	HET	INTRON
SBS	Chr5	26040563	T-C	HET	INTRON
SBS	Chr5	28762454	T-C	HET	INTRON
SBS	Chr6	173772	C-T	HET	INTRON
SBS	Chr6	6074044	G-A	HET	INTERGENIC
SBS	Chr6	7304589	C-T	HET	INTERGENIC
SBS	Chr6	17407980	G-C	HET	INTERGENIC
SBS	Chr6	23754804	G-A	HET	INTERGENIC
SBS	Chr7	5502373	T-C	HET	INTRON
SBS	Chr7	18499260	T-C	HET	INTRON
SBS	Chr7	28917145	T-C	HET	INTERGENIC
SBS	Chr8	3545309	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g06380
SBS	Chr8	7095143	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12050
SBS	Chr8	15977059	A-G	HET	UTR_3_PRIME
SBS	Chr8	19328382	T-A	HET	INTERGENIC
SBS	Chr8	22451583	T-C	HOMO	INTERGENIC
SBS	Chr9	15727775	C-A	HOMO	INTERGENIC
SBS	Chr9	20564720	A-T	HOMO	INTERGENIC
SBS	Chr10	3132179	A-G	HET	INTERGENIC
SBS	Chr10	12386668	C-T	HET	INTERGENIC
SBS	Chr11	21440128	A-T	HET	INTERGENIC
SBS	Chr12	4003025	C-G	HET	INTERGENIC
SBS	Chr12	20392717	A-G	HET	INTERGENIC
SBS	Chr12	24943531	T-C	HET	UTR_3_PRIME

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	176985	177002	17
Deletion	Chr3	1037586	1037595	9
Deletion	Chr3	2253271	2253275	4
Deletion	Chr3	4645325	4645328	3
Deletion	Chr1	5674041	5674042	1
Deletion	Chr3	12044835	12044839	4
Deletion	Chr4	13306934	13306935	1
Deletion	Chr9	13577000	13577001	1
Deletion	Chr5	15240652	15240654	2	LOC_Os05g26190
Deletion	Chr6	17957574	17957577	3
Deletion	Chr9	18175082	18175083	1	LOC_Os09g29890
Deletion	Chr9	18817214	18817215	1
Deletion	Chr12	19238706	19238708	2
Deletion	Chr7	20498435	20498436	1
Deletion	Chr2	20747531	20747532	1
Deletion	Chr3	20852136	20852137	1
Deletion	Chr1	20936978	20937010	32	LOC_Os01g37460
Deletion	Chr11	25899558	25899559	1
Deletion	Chr4	25996161	25996162	1
Deletion	Chr2	26567035	26567114	79
Deletion	Chr7	27412388	27412389	1
Deletion	Chr5	29396274	29396283	9	LOC_Os05g51250
Deletion	Chr3	30299257	30299258	1
Deletion	Chr3	30961268	30961270	2	LOC_Os03g54000
Deletion	Chr4	32308896	32308897	1	LOC_Os04g54260
Deletion	Chr1	38844018	38844027	9
Deletion	Chr1	41710165	41710167	2

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	7517224	7517225	2
Insertion	Chr5	22659608	22659610	3
Insertion	Chr1	9233127	9233127	1
Insertion	Chr2	3590576	3590576	1
Insertion	Chr2	26333550	26333551	2
Insertion	Chr4	15177145	15177145	1
Insertion	Chr5	11112452	11112452	1
Insertion	Chr7	27892018	27892059	42
Insertion	Chr8	2732570	2732571	2
Insertion	Chr9	17230360	17230380	21
Insertion	Chr9	21472841	21472859	19
Insertion	Chr10	2477982	2478018	37
Insertion	Chr11	14910378	14910399	22
Insertion	Chr11	25056435	25056435	1
Insertion	Chr12	13964542	13964542	1
Insertion	Chr12	14962359	14962359	1
Insertion	Chr12	26155950	26155950	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2742627	3689578
Inversion	Chr3	2742641	3689584
Inversion	Chr4	12674012	12674213
Inversion	Chr9	15921728	16263895	LOC_Os09g26360
Inversion	Chr9	15921731	16264034	2
Inversion	Chr9	19759068	19759249
Inversion	Chr6	20298466	20298637
Inversion	Chr5	22781431	23204668	LOC_Os05g39540

No Translocation

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