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Mutant Information

Mutant Name	FN4389-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4389-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10008837	G-A	HET	INTRON
SBS	Chr1	18133736	G-C	HET	INTERGENIC
SBS	Chr1	25330873	C-T	HOMO	INTERGENIC
SBS	Chr1	284252	T-C	HET	INTERGENIC
SBS	Chr1	39744730	C-T	HET	INTERGENIC
SBS	Chr10	4626787	G-A	HET	INTRON
SBS	Chr10	6051182	T-A	HET	INTERGENIC
SBS	Chr10	6051184	T-G	HET	INTERGENIC
SBS	Chr11	13025417	T-C	HET	INTERGENIC
SBS	Chr11	17437533	T-G	HOMO	INTRON
SBS	Chr12	10746702	A-C	HET	INTERGENIC
SBS	Chr12	14717201	G-T	HET	INTERGENIC
SBS	Chr12	15540043	C-A	HET	INTERGENIC
SBS	Chr2	14617354	G-A	HET	INTERGENIC
SBS	Chr2	18854299	C-T	HET	INTERGENIC
SBS	Chr2	3008788	C-T	HOMO	INTERGENIC
SBS	Chr2	4839070	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09430
SBS	Chr3	16883230	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g29614
SBS	Chr3	16883233	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g29614
SBS	Chr3	28698090	C-T	HET	INTERGENIC
SBS	Chr3	34112927	A-T	HET	INTERGENIC
SBS	Chr4	14787421	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g25490
SBS	Chr4	15034012	T-A	HET	INTERGENIC
SBS	Chr4	16670581	G-A	HET	INTRON
SBS	Chr4	20227283	C-T	HET	INTERGENIC
SBS	Chr4	2963550	A-T	HET	INTRON
SBS	Chr4	6883817	G-T	HET	INTERGENIC
SBS	Chr5	13810861	A-G	HET	INTERGENIC
SBS	Chr5	1693469	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g03800
SBS	Chr5	28773140	A-G	HET	INTRON
SBS	Chr5	34134	T-A	HET	INTRON
SBS	Chr5	7845922	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g14034
SBS	Chr6	20520498	T-C	HET	INTERGENIC
SBS	Chr6	22067734	C-T	HET	STOP_GAINED	LOC_Os06g37340
SBS	Chr6	22957302	G-C	HET	START_GAINED
SBS	Chr6	24171023	C-T	HET	INTERGENIC
SBS	Chr6	26682463	A-T	HET	INTRON
SBS	Chr6	28633164	T-C	HET	INTERGENIC
SBS	Chr7	14075674	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24760
SBS	Chr7	29426157	A-T	HOMO	INTERGENIC
SBS	Chr7	8544550	C-A	HET	INTRON
SBS	Chr8	11451752	A-G	HET	INTRON
SBS	Chr8	12194351	C-T	HET	INTRON
SBS	Chr8	17941063	G-A	HET	INTERGENIC
SBS	Chr8	27837720	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g44220
SBS	Chr8	7141046	C-T	HET	INTERGENIC
SBS	Chr9	12891763	G-A	HOMO	INTRON
SBS	Chr9	5808505	C-G	HOMO	INTERGENIC
SBS	Chr9	6722265	G-A	HET	INTRON
SBS	Chr9	9351363	T-A	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	493641	493652	11
Deletion	Chr2	2268442	2268450	8	LOC_Os02g04910
Deletion	Chr2	2721240	2721241	1
Deletion	Chr7	3091008	3091019	11
Deletion	Chr7	3370430	3370431	1
Deletion	Chr9	5374723	5374724	1	LOC_Os09g09880
Deletion	Chr5	5688056	5688061	5	LOC_Os05g10440
Deletion	Chr9	6416849	6416850	1
Deletion	Chr4	6616146	6616147	1
Deletion	Chr12	6993397	6993398	1
Deletion	Chr6	7582641	7582642	1
Deletion	Chr5	7685822	7685824	2	LOC_Os05g13830
Deletion	Chr5	8164800	8164863	63
Deletion	Chr1	9096281	9096282	1
Deletion	Chr8	9119046	9119047	1
Deletion	Chr8	9881342	9881382	40
Deletion	Chr4	10383555	10383572	17
Deletion	Chr1	11701029	11701030	1
Deletion	Chr3	12077415	12077416	1
Deletion	Chr11	13252982	13252983	1
Deletion	Chr10	13461032	13461033	1
Deletion	Chr12	14098566	14098567	1
Deletion	Chr1	14408071	14408072	1
Deletion	Chr7	14437736	14437739	3	LOC_Os07g25270
Deletion	Chr4	14534515	14534516	1
Deletion	Chr7	15382337	15382341	4
Deletion	Chr5	17939001	17958000	19000	3
Deletion	Chr6	18396523	18396524	1
Deletion	Chr9	18565535	18565536	1
Deletion	Chr2	23951914	23951915	1
Deletion	Chr4	24144273	24144280	7
Deletion	Chr4	24721095	24721105	10
Deletion	Chr4	27561398	27561399	1
Deletion	Chr2	27969874	27969877	3
Deletion	Chr1	32966793	32966794	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26358732	26358770	39
Insertion	Chr1	7049745	7049745	1
Insertion	Chr1	8482298	8482298	1
Insertion	Chr1	9790309	9790310	2
Insertion	Chr11	12116424	12116465	42
Insertion	Chr3	18285652	18285655	4
Insertion	Chr3	18343568	18343571	4
Insertion	Chr3	28809910	28809910	1
Insertion	Chr4	12143145	12143145	1	LOC_Os04g21470
Insertion	Chr4	19784630	19784631	2
Insertion	Chr5	6999334	6999335	2
Insertion	Chr6	31008070	31008071	2
Insertion	Chr8	16867262	16867262	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9128177	9128384
Inversion	Chr5	17105253	17244934	2
Inversion	Chr6	20215917	20468920

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10051313	Chr4	7775928	2
Translocation	Chr12	15877924	Chr11	17055060
Translocation	Chr9	16812688	Chr1	32431488
Translocation	Chr5	17105253	Chr4	18428519	2
Translocation	Chr5	17244940	Chr4	18429846
Translocation	Chr6	20215930	Chr5	9486266

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