Search Results
Mutant Information |
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Mutant Name | FN4391-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4391-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1611421 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr1 | 13817589 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 18051274 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 19433877 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 20320753 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 39044086 | G-A | HOMO | INTERGENIC | |
SBS | Chr2 | 4398183 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr2 | 12224755 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 12224757 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 27334319 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g45070 |
SBS | Chr2 | 27334320 | C-A | HET | STOP_GAINED | LOC_Os02g45070 |
SBS | Chr3 | 1384636 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g03240 |
SBS | Chr3 | 20092203 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g36220 |
SBS | Chr3 | 22196267 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 27749563 | G-A | HOMO | INTRON | |
SBS | Chr4 | 3944155 | G-C | HET | INTERGENIC | |
SBS | Chr4 | 7083336 | G-A | HET | INTRON | |
SBS | Chr4 | 10523749 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 24715010 | C-T | HET | STOP_GAINED | LOC_Os04g41690 |
SBS | Chr5 | 7611148 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 8935604 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g15820 |
SBS | Chr5 | 14031402 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 5737322 | G-C | HET | INTERGENIC | |
SBS | Chr6 | 6959951 | C-T | HOMO | INTERGENIC | |
SBS | Chr6 | 16826535 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g29400 |
SBS | Chr7 | 6572579 | A-G | HET | INTERGENIC | |
SBS | Chr7 | 11598160 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g19570 |
SBS | Chr7 | 27398525 | T-C | HET | INTERGENIC | |
SBS | Chr8 | 6236032 | G-T | HOMO | INTERGENIC | |
SBS | Chr9 | 14015108 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 22468011 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 8705248 | A-G | HET | INTERGENIC | |
SBS | Chr11 | 14921495 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26080 |
SBS | Chr12 | 10721715 | T-A | HET | INTERGENIC |
Deletions: 31
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 466478 | 466479 | 1 | |
Deletion | Chr5 | 1950929 | 1950930 | 1 | |
Deletion | Chr8 | 2449308 | 2449334 | 26 | |
Deletion | Chr3 | 2704035 | 2704042 | 7 | |
Deletion | Chr4 | 3091006 | 3091007 | 1 | LOC_Os04g05970 |
Deletion | Chr12 | 3822975 | 3822981 | 6 | |
Deletion | Chr7 | 5182911 | 5182912 | 1 | |
Deletion | Chr6 | 5816263 | 5816269 | 6 | |
Deletion | Chr12 | 7007418 | 7007419 | 1 | LOC_Os12g12710 |
Deletion | Chr8 | 7625963 | 7625964 | 1 | |
Deletion | Chr5 | 11035364 | 11035369 | 5 | |
Deletion | Chr8 | 11119057 | 11119065 | 8 | |
Deletion | Chr2 | 11470301 | 11470302 | 1 | |
Deletion | Chr1 | 12321746 | 12321747 | 1 | |
Deletion | Chr5 | 12848988 | 12848990 | 2 | |
Deletion | Chr6 | 12918693 | 12918694 | 1 | |
Deletion | Chr4 | 13450729 | 13450730 | 1 | |
Deletion | Chr8 | 13637458 | 13637459 | 1 | |
Deletion | Chr3 | 14857056 | 14857064 | 8 | |
Deletion | Chr9 | 15793569 | 15793570 | 1 | |
Deletion | Chr2 | 16492222 | 16492223 | 1 | LOC_Os02g27850 |
Deletion | Chr6 | 17168041 | 17168043 | 2 | |
Deletion | Chr11 | 19249433 | 19249440 | 7 | LOC_Os11g32630 |
Deletion | Chr9 | 21072304 | 21072305 | 1 | |
Deletion | Chr6 | 21265308 | 21265438 | 130 | LOC_Os06g36290 |
Deletion | Chr3 | 21332775 | 21332776 | 1 | |
Deletion | Chr2 | 23701121 | 23701122 | 1 | |
Deletion | Chr12 | 24711727 | 24711735 | 8 | LOC_Os12g39980 |
Deletion | Chr12 | 25826284 | 25826293 | 9 | |
Deletion | Chr11 | 26055452 | 26055453 | 1 | |
Deletion | Chr1 | 31900597 | 31900599 | 2 |
Insertions: 15
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 5466614 | 5466709 | LOC_Os06g10580 |
Inversion | Chr7 | 11868430 | 11868656 | |
Inversion | Chr8 | 19891709 | 19891858 | |
Inversion | Chr2 | 28090184 | 28090309 | LOC_Os02g46090 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 5176796 | Chr7 | 2067143 | |
Translocation | Chr9 | 5176804 | Chr7 | 2080161 | |
Translocation | Chr7 | 6562842 | Chr6 | 16677637 | LOC_Os07g11860 |
Translocation | Chr7 | 15420079 | Chr3 | 28063831 |