Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13817589	C-T	HET	INTERGENIC
SBS	Chr1	1611421	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	18051274	T-C	HET	INTERGENIC
SBS	Chr1	19433877	G-A	HOMO	INTERGENIC
SBS	Chr1	20320753	A-G	HET	INTERGENIC
SBS	Chr1	39044086	G-A	HOMO	INTERGENIC
SBS	Chr10	22468011	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	14921495	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26080
SBS	Chr11	8705248	A-G	HET	INTERGENIC
SBS	Chr12	10721715	T-A	HET	INTERGENIC
SBS	Chr2	12224755	T-C	HET	INTERGENIC
SBS	Chr2	12224757	G-A	HET	INTERGENIC
SBS	Chr2	27334319	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g45070
SBS	Chr2	27334320	C-A	HET	STOP_GAINED	LOC_Os02g45070
SBS	Chr2	4398183	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	1384636	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03240
SBS	Chr3	20092203	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36220
SBS	Chr3	22196267	C-A	HET	INTERGENIC
SBS	Chr3	27749563	G-A	HOMO	INTRON
SBS	Chr4	10523749	G-A	HET	INTERGENIC
SBS	Chr4	24715010	C-T	HET	STOP_GAINED	LOC_Os04g41690
SBS	Chr4	3944155	G-C	HET	INTERGENIC
SBS	Chr4	7083336	G-A	HET	INTRON
SBS	Chr5	14031402	G-A	HET	INTERGENIC
SBS	Chr5	7611148	G-A	HET	INTERGENIC
SBS	Chr5	8935604	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15820
SBS	Chr6	16826535	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g29400
SBS	Chr6	5737322	G-C	HET	INTERGENIC
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr7	11598160	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g19570
SBS	Chr7	27398525	T-C	HET	INTERGENIC
SBS	Chr7	6572579	A-G	HET	INTERGENIC
SBS	Chr8	6236032	G-T	HOMO	INTERGENIC
SBS	Chr9	14015108	C-T	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	466478	466479	1
Deletion	Chr5	1950929	1950930	1
Deletion	Chr8	2449308	2449334	26
Deletion	Chr3	2704035	2704042	7
Deletion	Chr4	3091006	3091007	1	LOC_Os04g05970
Deletion	Chr12	3822975	3822981	6
Deletion	Chr7	5182911	5182912	1
Deletion	Chr6	5816263	5816269	6
Deletion	Chr12	7007418	7007419	1	LOC_Os12g12710
Deletion	Chr8	7625963	7625964	1
Deletion	Chr5	11035364	11035369	5
Deletion	Chr8	11119057	11119065	8
Deletion	Chr2	11470301	11470302	1
Deletion	Chr1	12321746	12321747	1
Deletion	Chr5	12848988	12848990	2
Deletion	Chr6	12918693	12918694	1
Deletion	Chr4	13450729	13450730	1
Deletion	Chr8	13637458	13637459	1
Deletion	Chr3	14857056	14857064	8
Deletion	Chr9	15793569	15793570	1
Deletion	Chr2	16492222	16492223	1	LOC_Os02g27850
Deletion	Chr6	17168041	17168043	2
Deletion	Chr11	19249433	19249440	7	LOC_Os11g32630
Deletion	Chr9	21072304	21072305	1
Deletion	Chr6	21265308	21265438	130	LOC_Os06g36290
Deletion	Chr3	21332775	21332776	1
Deletion	Chr2	23701121	23701122	1
Deletion	Chr12	24711727	24711735	8	LOC_Os12g39980
Deletion	Chr12	25826284	25826293	9
Deletion	Chr11	26055452	26055453	1
Deletion	Chr1	31900597	31900599	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38095186	38095189	4
Insertion	Chr11	27349205	27349241	37
Insertion	Chr12	18672436	18672436	1
Insertion	Chr12	9449700	9449700	1
Insertion	Chr3	22147578	22147579	2
Insertion	Chr4	26436428	26436428	1
Insertion	Chr4	30752926	30752941	16
Insertion	Chr6	22384641	22384716	76
Insertion	Chr7	16173766	16173766	1
Insertion	Chr7	17025762	17025762	1
Insertion	Chr7	2766774	2766775	2
Insertion	Chr8	14837807	14837809	3
Insertion	Chr8	16636043	16636043	1
Insertion	Chr8	20501740	20501740	1
Insertion	Chr9	3757002	3757002	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5466614	5466709	LOC_Os06g10580
Inversion	Chr7	11868430	11868656
Inversion	Chr8	19891709	19891858
Inversion	Chr2	28090184	28090309	LOC_Os02g46090

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5176796	Chr7	2067143
Translocation	Chr9	5176804	Chr7	2080161
Translocation	Chr7	6562842	Chr6	16677637	LOC_Os07g11860
Translocation	Chr7	15420079	Chr3	28063831

Main menu