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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22332783	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g39590
SBS	Chr1	25580344	T-A	HOMO	INTRON
SBS	Chr1	27326851	C-A	HET	SYNONYMOUS_CODING
SBS	Chr1	3772730	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g07840
SBS	Chr1	42384056	T-C	HET	INTERGENIC
SBS	Chr10	13817204	A-G	HET	INTERGENIC
SBS	Chr10	15340528	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g29530
SBS	Chr10	20993088	A-C	HET	INTERGENIC
SBS	Chr11	22720125	A-G	HOMO	INTERGENIC
SBS	Chr11	8395786	C-T	HOMO	INTERGENIC
SBS	Chr12	10316586	G-A	HET	INTERGENIC
SBS	Chr12	16694603	C-G	HET	INTERGENIC
SBS	Chr12	3985629	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g07874
SBS	Chr2	10272734	C-G	HET	INTERGENIC
SBS	Chr2	15194992	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25900
SBS	Chr2	15263694	C-T	HET	INTERGENIC
SBS	Chr2	2050914	G-A	HET	INTERGENIC
SBS	Chr2	28365480	G-A	HET	INTRON
SBS	Chr3	17590829	T-G	HOMO	INTERGENIC
SBS	Chr3	21031127	C-T	HET	UTR_3_PRIME
SBS	Chr4	21629096	T-C	HET	INTERGENIC
SBS	Chr4	28919700	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g48500
SBS	Chr4	34478227	A-G	HET	INTERGENIC
SBS	Chr5	25113116	C-T	HET	INTERGENIC
SBS	Chr5	9657223	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16940
SBS	Chr6	16951031	C-T	HET	INTRON
SBS	Chr6	20035147	T-C	HET	UTR_3_PRIME
SBS	Chr6	25521816	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42460
SBS	Chr7	21112242	C-T	HOMO	INTRON
SBS	Chr8	21547209	G-T	HET	INTERGENIC
SBS	Chr8	23355938	A-C	HET	INTERGENIC
SBS	Chr8	24789748	C-G	HET	INTERGENIC
SBS	Chr9	9936647	G-A	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1843385	1843386	1
Deletion	Chr8	3097620	3097621	1
Deletion	Chr9	3288363	3288365	2
Deletion	Chr5	3860008	3860012	4
Deletion	Chr7	8449006	8449007	1	LOC_Os07g14800
Deletion	Chr11	9907912	9907913	1
Deletion	Chr2	12196912	12196913	1
Deletion	Chr4	14096205	14096206	1
Deletion	Chr12	14285588	14285596	8
Deletion	Chr9	15685627	15685628	1
Deletion	Chr3	16650211	16650234	23
Deletion	Chr2	17363398	17363400	2
Deletion	Chr3	17607586	17607600	14	LOC_Os03g30910
Deletion	Chr12	18184620	18184622	2
Deletion	Chr2	19416092	19416097	5
Deletion	Chr6	19581469	19581470	1
Deletion	Chr5	19704469	19704470	1
Deletion	Chr7	24347182	24347223	41
Deletion	Chr1	24945307	24945309	2
Deletion	Chr1	25690741	25690742	1	LOC_Os01g45260
Deletion	Chr4	27597878	27597879	1
Deletion	Chr3	28994603	28994611	8
Deletion	Chr2	30190701	30190703	2	LOC_Os02g49400
Deletion	Chr1	33754010	33754016	6
Deletion	Chr2	34380134	34380135	1

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32900016	32900016	1
Insertion	Chr1	41662961	41662961	1
Insertion	Chr10	16648301	16648301	1
Insertion	Chr10	19688232	19688233	2
Insertion	Chr10	6152570	6152570	1
Insertion	Chr11	9328749	9328749	1
Insertion	Chr12	17244519	17244519	1
Insertion	Chr12	26840181	26840182	2
Insertion	Chr2	17055652	17055658	7
Insertion	Chr3	34943710	34943710	1
Insertion	Chr4	1227908	1227920	13
Insertion	Chr4	2151507	2151507	1
Insertion	Chr5	11464075	11464078	4
Insertion	Chr5	20428418	20428418	1
Insertion	Chr5	21340730	21340730	1
Insertion	Chr7	15594325	15594325	1
Insertion	Chr7	19676771	19676771	1
Insertion	Chr8	22451380	22451381	2
Insertion	Chr8	26738323	26738323	1
Insertion	Chr8	3980916	3980917	2
Insertion	Chr9	2020548	2020548	1

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	9511394	10113434
Inversion	Chr6	10839767	10839942
Inversion	Chr10	16730186	16730340
Inversion	Chr10	18787308	18912457
Inversion	Chr10	18787312	18912457
Inversion	Chr11	25259214	25259387
Inversion	Chr5	26836235	26836537	LOC_Os05g46290
Inversion	Chr3	29904412	29904532
Inversion	Chr1	35883165	35883287

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7002688	Chr3	13461614	LOC_Os08g11940
Translocation	Chr10	18760551	Chr6	9511388
Translocation	Chr10	18760707	Chr6	10113428
Translocation	Chr10	19026764	Chr3	17936656

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