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Mutant Information

Mutant Name	FN4394-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4394-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11608410	C-A	HET	INTERGENIC
SBS	Chr1	17228204	A-C	HOMO	INTRON
SBS	Chr1	25170912	C-T	HET	INTERGENIC
SBS	Chr1	2583944	T-A	HET	INTERGENIC
SBS	Chr1	6587977	A-G	HET	INTERGENIC
SBS	Chr1	8903091	A-G	HET	INTERGENIC
SBS	Chr10	1874792	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	20269047	C-A	HET	INTERGENIC
SBS	Chr11	21936171	G-A	HET	INTRON
SBS	Chr11	26078623	T-C	HOMO	INTRON
SBS	Chr11	4522944	C-T	HET	INTRON
SBS	Chr11	9358500	C-T	HET	INTERGENIC
SBS	Chr12	21729387	A-G	HOMO	INTERGENIC
SBS	Chr12	21729388	G-A	HOMO	INTERGENIC
SBS	Chr12	26695303	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42970
SBS	Chr2	19522074	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g32870
SBS	Chr3	1002554	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr3	1869299	G-C	HOMO	INTERGENIC
SBS	Chr3	20481308	T-C	HOMO	INTERGENIC
SBS	Chr3	25931195	T-C	HET	INTERGENIC
SBS	Chr3	29868474	T-C	HET	INTERGENIC
SBS	Chr3	32324699	C-T	HET	INTERGENIC
SBS	Chr4	1071928	G-T	HET	INTERGENIC
SBS	Chr4	13730730	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g24030
SBS	Chr4	1396653	G-T	HET	INTERGENIC
SBS	Chr4	29943957	T-C	HET	INTERGENIC
SBS	Chr4	3248645	C-T	HET	INTERGENIC
SBS	Chr4	35312053	A-G	HOMO	INTRON
SBS	Chr5	13681409	T-A	HET	INTERGENIC
SBS	Chr5	24505677	G-T	HET	INTERGENIC
SBS	Chr5	24859375	G-A	HOMO	INTERGENIC
SBS	Chr5	6226998	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	646898	G-C	HET	INTERGENIC
SBS	Chr5	8010833	G-A	HET	INTERGENIC
SBS	Chr5	9377793	G-A	HOMO	INTERGENIC
SBS	Chr6	12939076	G-C	HET	INTERGENIC
SBS	Chr7	23366977	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38980
SBS	Chr7	8454097	T-C	HOMO	INTERGENIC
SBS	Chr7	9323629	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16000
SBS	Chr8	10386304	G-T	HET	INTERGENIC
SBS	Chr8	11298628	G-T	HET	SYNONYMOUS_CODING
SBS	Chr8	23126818	C-T	HOMO	INTERGENIC
SBS	Chr8	7009647	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11960

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1219043	1219061	18	LOC_Os06g03220
Deletion	Chr2	1498671	1498672	1
Deletion	Chr5	4555505	4555506	1
Deletion	Chr5	5570951	5570952	1
Deletion	Chr3	6948267	6948272	5	LOC_Os03g12890
Deletion	Chr1	9013496	9013498	2
Deletion	Chr7	9372390	9372393	3
Deletion	Chr8	13462575	13462576	1	LOC_Os08g22340
Deletion	Chr2	15671581	15671582	1	LOC_Os02g26690
Deletion	Chr4	16087423	16087425	2	LOC_Os04g27220
Deletion	Chr7	17081889	17081899	10
Deletion	Chr9	18206709	18206710	1
Deletion	Chr3	18604276	18604285	9	LOC_Os03g32526
Deletion	Chr3	18770641	18770642	1
Deletion	Chr8	18772457	18772458	1
Deletion	Chr2	18855217	18855218	1
Deletion	Chr6	20069015	20069041	26
Deletion	Chr8	20654895	20654896	1	LOC_Os08g33190
Deletion	Chr2	20743406	20743407	1
Deletion	Chr11	20871930	20871931	1	LOC_Os11g35590
Deletion	Chr4	21360311	21360312	1	LOC_Os04g35140
Deletion	Chr11	26230358	26230364	6	LOC_Os11g43430
Deletion	Chr6	27081999	27082009	10
Deletion	Chr1	27597397	27597410	13	LOC_Os01g48180
Deletion	Chr6	27724420	27724445	25
Deletion	Chr3	28954799	28954804	5
Deletion	Chr5	29586789	29586790	1
Deletion	Chr2	29700174	29700175	1
Deletion	Chr2	29811248	29811249	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	5787097	5787138	42
Insertion	Chr10	19937528	19937529	2
Insertion	Chr10	21325978	21325978	1
Insertion	Chr12	10729497	10729527	31
Insertion	Chr6	27413293	27413314	22
Insertion	Chr7	12416715	12416716	2
Insertion	Chr9	12476907	12476907	1
Insertion	Chr9	4160493	4160518	26
Insertion	Chr9	779762	779773	12

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4421483	4421608
Inversion	Chr6	4710368	4710534
Inversion	Chr7	10928855	10928948
Inversion	Chr6	11408006	11408167
Inversion	Chr11	26487512	26487721
Inversion	Chr4	34431329	34431513	LOC_Os04g57819

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4210432	Chr2	12350483
Translocation	Chr5	4210437	Chr2	12352422

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