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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32499036	A-G	HET	INTERGENIC
SBS	Chr1	42273127	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g72880
SBS	Chr10	11691754	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22560
SBS	Chr10	14362515	G-A	HET	INTERGENIC
SBS	Chr10	19138527	T-A	HET	INTERGENIC
SBS	Chr11	13202825	T-C	HOMO	INTERGENIC
SBS	Chr12	13069720	G-A	HET	INTERGENIC
SBS	Chr12	1592471	C-T	HET	INTERGENIC
SBS	Chr12	24641398	C-T	HET	INTERGENIC
SBS	Chr12	8870722	A-G	HET	INTRON
SBS	Chr2	16623525	A-G	HOMO	INTRON
SBS	Chr2	1780449	A-T	HET	STOP_GAINED	LOC_Os02g04090
SBS	Chr2	19267032	A-T	HOMO	INTERGENIC
SBS	Chr3	2128025	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04560
SBS	Chr3	4917767	A-T	HET	INTERGENIC
SBS	Chr3	4917768	A-C	HET	INTERGENIC
SBS	Chr4	13851625	G-A	HET	INTERGENIC
SBS	Chr4	18080981	C-T	HET	INTRON
SBS	Chr4	28698778	C-G	HET	INTERGENIC
SBS	Chr5	11435151	A-T	HET	UTR_3_PRIME
SBS	Chr6	10389418	A-T	HET	SYNONYMOUS_CODING
SBS	Chr6	11987760	A-G	HOMO	INTRON
SBS	Chr6	26716162	T-A	HET	INTRON
SBS	Chr6	30158103	G-T	HET	INTERGENIC
SBS	Chr6	6054750	G-A	HET	INTERGENIC
SBS	Chr7	4669822	C-A	HET	INTERGENIC
SBS	Chr8	21172918	G-A	HOMO	INTERGENIC
SBS	Chr8	8554232	C-T	HET	INTERGENIC
SBS	Chr9	17893042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29440
SBS	Chr9	21516437	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	2980035	G-A	HET	INTERGENIC
SBS	Chr9	9705958	C-T	HET	INTRON
SBS	Chr9	9763222	A-G	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3785160	3785162	2
Deletion	Chr5	4319001	4609000	290000	47
Deletion	Chr5	4515065	4515066	1
Deletion	Chr5	5669206	5669221	15
Deletion	Chr11	7153733	7153734	1
Deletion	Chr2	10185620	10185634	14
Deletion	Chr12	11689736	11689738	2
Deletion	Chr6	13048001	13067000	19000	4
Deletion	Chr12	15947136	15947137	1
Deletion	Chr12	16443050	16443053	3
Deletion	Chr12	16843520	16843529	9
Deletion	Chr2	18107719	18107725	6	LOC_Os02g30400
Deletion	Chr1	19900788	19900789	1
Deletion	Chr2	21601923	21601929	6
Deletion	Chr5	22139600	22139602	2
Deletion	Chr9	22456585	22456597	12
Deletion	Chr2	22902795	22902796	1
Deletion	Chr1	23018242	23018245	3
Deletion	Chr12	23068772	23068773	1
Deletion	Chr2	26017759	26017760	1
Deletion	Chr8	26887078	26887084	6
Deletion	Chr11	28909080	28909085	5
Deletion	Chr4	29209202	29209246	44
Deletion	Chr3	31100296	31100297	1
Deletion	Chr3	31594071	31594072	1
Deletion	Chr1	35934460	35934461	1
Deletion	Chr1	40412956	40412957	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	21801636	21801636	1
Insertion	Chr11	11969367	11969367	1
Insertion	Chr2	12779572	12779572	1
Insertion	Chr2	13595858	13595858	1
Insertion	Chr2	4553427	4553427	1
Insertion	Chr4	10868505	10868505	1
Insertion	Chr5	29945899	29945899	1
Insertion	Chr6	16620877	16620878	2
Insertion	Chr6	20321731	20321732	2
Insertion	Chr6	22518764	22518764	1
Insertion	Chr7	22481083	22481083	1
Insertion	Chr9	15141315	15141315	1
Insertion	Chr9	7293237	7293312	76

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14670197	14670344
Inversion	Chr4	16540731	16540875	LOC_Os04g28010

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8494271	Chr1	32071121	LOC_Os08g14210
Translocation	Chr11	10449196	Chr6	17476301	2
Translocation	Chr12	18596757	Chr5	10270578
Translocation	Chr9	21320883	Chr7	16054069	LOC_Os09g36960
Translocation	Chr9	21578730	Chr7	16054069

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