Search Results

Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1586023	T-A	HET	SYNONYMOUS_CODING
SBS	Chr1	22676452	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g40190
SBS	Chr1	22676453	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g40190
SBS	Chr2	3922629	A-T	HET	SYNONYMOUS_CODING
SBS	Chr2	13816505	G-A	HET	INTERGENIC
SBS	Chr2	14083183	G-T	HET	INTRON
SBS	Chr2	26904528	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	31901922	C-A	HOMO	INTERGENIC
SBS	Chr2	33866702	T-C	HOMO	INTERGENIC
SBS	Chr3	4875979	C-A	HET	INTERGENIC
SBS	Chr3	5916982	G-A	HET	UTR_3_PRIME
SBS	Chr3	19251173	C-T	HOMO	INTERGENIC
SBS	Chr3	31958380	C-A	HET	INTERGENIC
SBS	Chr3	35094555	G-A	HET	INTERGENIC
SBS	Chr4	23411690	T-A	HET	INTERGENIC
SBS	Chr4	26090678	C-T	HET	START_GAINED
SBS	Chr4	32424046	C-T	HET	INTERGENIC
SBS	Chr4	35117997	G-A	HET	INTERGENIC
SBS	Chr4	35296271	T-C	HET	INTERGENIC
SBS	Chr5	9913967	G-C	HET	INTERGENIC
SBS	Chr6	4740191	A-C	HET	INTERGENIC
SBS	Chr6	29894532	T-A	HOMO	INTERGENIC
SBS	Chr7	2625454	T-A	HET	INTERGENIC
SBS	Chr7	29097690	A-C	HET	INTRON
SBS	Chr7	29115684	A-T	HET	INTERGENIC
SBS	Chr8	10230862	G-A	HOMO	INTERGENIC
SBS	Chr8	23648218	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g37390
SBS	Chr9	12905269	A-T	HET	INTERGENIC
SBS	Chr10	7565523	T-A	HET	INTERGENIC
SBS	Chr11	10975024	T-A	HET	INTRON
SBS	Chr11	16389229	G-A	HET	INTRON
SBS	Chr11	18304899	C-A	HET	INTERGENIC
SBS	Chr12	7503659	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g13410
SBS	Chr12	11084840	A-G	HET	INTERGENIC
SBS	Chr12	15110010	T-A	HET	INTERGENIC
SBS	Chr12	15738900	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26860
SBS	Chr12	17895936	G-A	HET	INTERGENIC

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1480730	1480824	94
Deletion	Chr9	7933001	7981000	48000	3
Deletion	Chr9	7991001	8019000	28000	4
Deletion	Chr9	8061001	8472000	411000	56
Deletion	Chr9	8464474	8464476	2
Deletion	Chr9	8584001	8721000	137000	20
Deletion	Chr9	8723001	8772000	49000	7
Deletion	Chr9	8773001	8796000	23000	3
Deletion	Chr9	8829001	8837000	8000
Deletion	Chr9	8849001	9017000	168000	15
Deletion	Chr9	10050001	10082000	32000	3
Deletion	Chr9	10082833	10082837	4
Deletion	Chr9	10085001	10134000	49000	7
Deletion	Chr5	10300460	10300461	1
Deletion	Chr9	10324621	10324622	1
Deletion	Chr8	11063007	11063012	5
Deletion	Chr6	12605057	12605058	1
Deletion	Chr5	12801691	12801692	1
Deletion	Chr10	13033128	13033129	1
Deletion	Chr11	13813324	13813325	1
Deletion	Chr6	15357001	15424000	67000	10
Deletion	Chr1	16253476	16253478	2
Deletion	Chr5	16419305	16419306	1
Deletion	Chr10	17048156	17048166	10	LOC_Os10g32550
Deletion	Chr12	17178822	17178823	1
Deletion	Chr9	19040575	19040589	14	LOC_Os09g31930
Deletion	Chr11	19909308	19909310	2
Deletion	Chr6	20653582	20653583	1
Deletion	Chr7	20881140	20881144	4
Deletion	Chr7	21631879	21631881	2
Deletion	Chr7	22191256	22191257	1
Deletion	Chr12	22319737	22319818	81
Deletion	Chr7	24640592	24640593	1
Deletion	Chr6	25104305	25104306	1
Deletion	Chr5	25579354	25579362	8	LOC_Os05g43950
Deletion	Chr11	25641001	25763000	122000	18
Deletion	Chr3	26058748	26058751	3
Deletion	Chr1	27773880	27773891	11
Deletion	Chr5	28886672	28886673	1
Deletion	Chr1	30471740	30471742	2
Deletion	Chr3	36141704	36141706	2

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31481587	31481588	2
Insertion	Chr5	4823941	4823941	1
Insertion	Chr12	2811559	2811562	4
Insertion	Chr2	3261472	3261521	50
Insertion	Chr2	9682827	9682827	1
Insertion	Chr2	11505080	11505080	1
Insertion	Chr3	28904961	28904961	1
Insertion	Chr4	15851	15852	2
Insertion	Chr4	1749969	1749969	1
Insertion	Chr4	2318704	2318704	1
Insertion	Chr7	14920283	14920283	1
Insertion	Chr7	20854229	20854229	1
Insertion	Chr7	21078742	21078742	1
Insertion	Chr8	6490988	6490988	1
Insertion	Chr8	12235654	12235654	1
Insertion	Chr8	15219904	15219980	77
Insertion	Chr9	9932087	9932087	1
Insertion	Chr9	9990395	9990396	2
Insertion	Chr10	14017949	14017949	1
Insertion	Chr11	18372524	18372571	48
Insertion	Chr11	28618744	28618744	1
Insertion	Chr12	20726300	20726302	3

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1699419	1699611
Inversion	Chr7	26035242	26202167	LOC_Os07g43790
Inversion	Chr7	26035245	26202174	LOC_Os07g43790
Inversion	Chr5	26466130	26466204	LOC_Os05g45660
Inversion	Chr2	32315702	32691558	2
Inversion	Chr2	32315747	32691559	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5167651	Chr5	11350817	LOC_Os09g09580
Translocation	Chr11	16212796	Chr6	16995884
Translocation	Chr3	18496044	Chr2	21442453	2
Translocation	Chr7	21272634	Chr2	25418754

Main menu