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| Mutant Information |
|---|
| Mutant Name | FN4400-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4400-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21286911 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 23576166 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr1 | 38789966 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 4524677 | G-T | HET | STOP_GAINED | LOC_Os10g08350 |
| SBS | Chr10 | 93897 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 9996228 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 9996231 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 9996234 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 15941391 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 15941392 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 106584 | G-A | HET | INTRON | |
| SBS | Chr12 | 14714612 | A-T | HET | INTRON | |
| SBS | Chr12 | 9652492 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 9652493 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 19618280 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 16168459 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 20151075 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 3000865 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 9761394 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g17570 |
| SBS | Chr4 | 12617284 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 2703366 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 3237075 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 4891343 | C-G | HET | INTERGENIC | |
| SBS | Chr5 | 10417939 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 23740325 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 23740326 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 28144052 | C-G | HET | UTR_5_PRIME | |
| SBS | Chr6 | 28719462 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 11674710 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 21296894 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 12861318 | C-T | HOMO | SPLICE_SITE_REGION | |
| SBS | Chr9 | 16321166 | G-A | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 176485 | 176488 | 3 | |
| Deletion | Chr4 | 2093934 | 2093936 | 2 | LOC_Os04g04400 |
| Deletion | Chr9 | 3777596 | 3777609 | 13 | |
| Deletion | Chr11 | 6642001 | 6658000 | 16000 | 3 |
| Deletion | Chr11 | 7566001 | 7578000 | 12000 | 5 |
| Deletion | Chr11 | 7583001 | 7678000 | 95000 | 10 |
| Deletion | Chr8 | 7854582 | 7854583 | 1 | |
| Deletion | Chr3 | 7895467 | 7895474 | 7 | |
| Deletion | Chr3 | 14665162 | 14665163 | 1 | |
| Deletion | Chr9 | 14721093 | 14721094 | 1 | |
| Deletion | Chr5 | 16224308 | 16224314 | 6 | |
| Deletion | Chr11 | 16700041 | 16700045 | 4 | |
| Deletion | Chr7 | 16701214 | 16701215 | 1 | LOC_Os07g28540 |
| Deletion | Chr11 | 18956067 | 18956068 | 1 | |
| Deletion | Chr6 | 20221631 | 20221632 | 1 | |
| Deletion | Chr4 | 26032119 | 26032120 | 1 | LOC_Os04g43916 |
| Deletion | Chr11 | 26920255 | 26920256 | 1 | |
| Deletion | Chr8 | 26936085 | 26936114 | 29 | |
| Deletion | Chr2 | 28819581 | 28819584 | 3 | |
| Deletion | Chr2 | 35483894 | 35483899 | 5 |
Insertions: 6
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1332998 | 2025353 | LOC_Os10g04290 |
| Inversion | Chr10 | 1333011 | 2025361 | LOC_Os10g04290 |
| Inversion | Chr9 | 11492385 | 11492544 | |
| Inversion | Chr3 | 15598293 | 15598438 | |
| Inversion | Chr5 | 22728116 | 22728236 | |
| Inversion | Chr5 | 24001834 | 24002106 |
No Translocation