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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1207003	A-G	HET	INTERGENIC
SBS	Chr1	26120408	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45990
SBS	Chr1	26579781	C-T	HET	INTERGENIC
SBS	Chr10	11020427	A-C	HET	INTERGENIC
SBS	Chr10	12213495	G-A	HOMO	INTERGENIC
SBS	Chr10	8041387	A-T	HET	INTRON
SBS	Chr11	16030118	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	21136238	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35970
SBS	Chr11	26874682	T-A	HET	INTERGENIC
SBS	Chr12	11876717	C-T	HET	INTRON
SBS	Chr12	1620452	C-T	HET	UTR_5_PRIME
SBS	Chr12	24060093	C-T	HET	INTERGENIC
SBS	Chr12	5202403	G-A	HET	INTERGENIC
SBS	Chr12	9525389	C-T	HET	INTERGENIC
SBS	Chr2	26467434	G-T	HET	INTRON
SBS	Chr2	34566539	A-T	HET	INTERGENIC
SBS	Chr3	13502297	G-A	HOMO	INTERGENIC
SBS	Chr3	1532356	G-A	HET	INTERGENIC
SBS	Chr3	5587147	A-C	HET	INTRON
SBS	Chr4	10346746	C-T	HET	INTERGENIC
SBS	Chr4	22072944	G-A	HOMO	INTERGENIC
SBS	Chr4	33341955	A-G	HET	INTERGENIC
SBS	Chr4	8897447	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	16880422	C-T	HET	INTERGENIC
SBS	Chr5	28468440	T-A	HET	INTERGENIC
SBS	Chr6	17149679	C-T	HOMO	INTERGENIC
SBS	Chr6	21205916	C-A	HOMO	INTERGENIC
SBS	Chr6	29172703	T-C	HOMO	INTERGENIC
SBS	Chr7	17505771	T-C	HOMO	INTRON
SBS	Chr7	3305423	A-T	HET	INTERGENIC
SBS	Chr7	8586838	C-A	HOMO	INTERGENIC
SBS	Chr8	1616103	T-A	HOMO	INTERGENIC
SBS	Chr9	10247553	C-A	HET	INTERGENIC

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3660461	3660462	1
Deletion	Chr5	4421241	4421242	1
Deletion	Chr5	7574432	7574477	45
Deletion	Chr1	8615204	8615205	1
Deletion	Chr9	9051376	9051388	12
Deletion	Chr4	10044865	10044867	2
Deletion	Chr11	11932118	11932139	21
Deletion	Chr3	13414166	13414241	75
Deletion	Chr9	13698597	13698598	1
Deletion	Chr2	13814995	13814997	2	LOC_Os02g23860
Deletion	Chr3	14101064	14101065	1
Deletion	Chr12	14211534	14211552	18
Deletion	Chr6	15284637	15284638	1
Deletion	Chr1	15397324	15397325	1
Deletion	Chr9	15428300	15428302	2
Deletion	Chr4	16223139	16223140	1
Deletion	Chr12	16750297	16750298	1
Deletion	Chr3	17135542	17135543	1	LOC_Os03g30030
Deletion	Chr5	17910567	17910568	1
Deletion	Chr4	19627132	19627133	1
Deletion	Chr4	19702505	19702506	1
Deletion	Chr5	20209240	20209241	1
Deletion	Chr12	20411001	20428000	17000	2
Deletion	Chr12	20431001	20452000	21000	3
Deletion	Chr12	20440542	20440544	2
Deletion	Chr12	20449503	20449505	2
Deletion	Chr12	20710669	20710713	44
Deletion	Chr6	21206741	21206747	6
Deletion	Chr2	22151521	22151540	19
Deletion	Chr2	22554403	22554405	2
Deletion	Chr1	25246729	25246730	1
Deletion	Chr1	25924222	25924223	1
Deletion	Chr3	26158345	26158346	1
Deletion	Chr6	26349837	26349838	1
Deletion	Chr6	27334067	27334076	9
Deletion	Chr3	30823677	30823689	12

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	13188395	13188395	1
Insertion	Chr10	3806101	3806104	4
Insertion	Chr11	14597702	14597704	3
Insertion	Chr11	22038210	22038247	38
Insertion	Chr12	15032505	15032505	1
Insertion	Chr2	14715551	14715551	1
Insertion	Chr6	27392560	27392560	1
Insertion	Chr7	16653757	16653757	1
Insertion	Chr7	16761285	16761328	44
Insertion	Chr7	26517072	26517073	2
Insertion	Chr8	20767372	20767372	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1212871	1213106	LOC_Os11g03280
Inversion	Chr2	1736261	1736458	LOC_Os02g04010
Inversion	Chr4	21610146	21610350	LOC_Os04g35510
Inversion	Chr1	38817796	38817883

No Translocation

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