Search Nipponbare

Mutant Information

Mutant Name	FN4402-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4402-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10828802	A-T	HET	INTERGENIC
SBS	Chr1	19800205	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35740
SBS	Chr1	21710042	C-T	HET	INTERGENIC
SBS	Chr1	27137993	A-T	HET	INTERGENIC
SBS	Chr1	27539058	C-G	HET	INTERGENIC
SBS	Chr10	10262985	C-T	HOMO	INTERGENIC
SBS	Chr10	12002323	A-T	HOMO	INTERGENIC
SBS	Chr10	16919510	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32210
SBS	Chr10	18246793	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	2290641	A-T	HET	INTRON
SBS	Chr10	943477	G-A	HET	INTERGENIC
SBS	Chr11	13169618	G-T	HET	INTERGENIC
SBS	Chr12	24302524	C-A	HET	INTERGENIC
SBS	Chr12	461388	A-C	HOMO	INTERGENIC
SBS	Chr12	7556116	C-T	HET	INTERGENIC
SBS	Chr2	1238661	G-A	HET	INTRON
SBS	Chr2	15724248	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26780
SBS	Chr2	17601327	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	14247418	G-A	HOMO	INTERGENIC
SBS	Chr3	19747713	T-C	HOMO	INTRON
SBS	Chr3	28013903	C-A	HOMO	INTERGENIC
SBS	Chr3	30231722	C-A	HET	INTRON
SBS	Chr3	32312070	G-A	HET	INTERGENIC
SBS	Chr4	1260008	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03050
SBS	Chr4	2405249	T-C	HET	INTERGENIC
SBS	Chr4	33349533	C-T	HET	INTERGENIC
SBS	Chr4	7378670	T-C	HET	INTERGENIC
SBS	Chr4	8520812	C-T	HOMO	INTERGENIC
SBS	Chr5	28811426	G-A	HET	INTERGENIC
SBS	Chr6	15363113	A-T	HOMO	INTRON
SBS	Chr6	17047962	G-A	HOMO	INTERGENIC
SBS	Chr6	20085782	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	24660885	C-T	HET	INTERGENIC
SBS	Chr7	11481104	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19400
SBS	Chr7	17070887	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g29160
SBS	Chr7	22368636	A-T	HET	INTERGENIC
SBS	Chr7	28128394	G-A	HET	INTERGENIC
SBS	Chr7	4485686	G-A	HET	INTRON
SBS	Chr7	7518758	G-A	HET	INTRON
SBS	Chr8	10894552	A-G	HOMO	INTRON
SBS	Chr8	24179869	G-T	HET	INTERGENIC
SBS	Chr8	8875671	C-A	HOMO	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2956500	2956543	43
Deletion	Chr2	3884339	3884348	9
Deletion	Chr6	5390609	5390620	11
Deletion	Chr6	5485685	5485686	1
Deletion	Chr3	5744837	5744842	5
Deletion	Chr8	6196376	6196377	1
Deletion	Chr10	6257116	6257152	36
Deletion	Chr5	9384304	9384323	19
Deletion	Chr6	9480548	9480555	7
Deletion	Chr7	9847424	9847425	1
Deletion	Chr12	10834771	10834772	1
Deletion	Chr8	11637201	11637260	59
Deletion	Chr4	11800073	11800074	1
Deletion	Chr12	12046496	12046497	1
Deletion	Chr2	12185001	12413000	228000	30
Deletion	Chr11	12187680	12187810	130
Deletion	Chr7	13226920	13226929	9	LOC_Os07g23440
Deletion	Chr3	15590401	15590421	20
Deletion	Chr10	15605986	15605989	3
Deletion	Chr1	15634355	15634359	4	LOC_Os01g27960
Deletion	Chr8	15722555	15722556	1
Deletion	Chr3	17151744	17151792	48
Deletion	Chr10	17582361	17582363	2
Deletion	Chr7	20355084	20355085	1
Deletion	Chr10	20611555	20611556	1
Deletion	Chr12	23057532	23057535	3
Deletion	Chr8	23075918	23075921	3
Deletion	Chr1	25823676	25823677	1
Deletion	Chr2	32104545	32104546	1
Deletion	Chr1	34886842	34886843	1
Deletion	Chr1	37759437	37759438	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	13695214	13695214	1
Insertion	Chr1	17442466	17442470	5
Insertion	Chr1	7516993	7516993	1
Insertion	Chr11	13095233	13095281	49
Insertion	Chr11	16724958	16724966	9
Insertion	Chr11	4885318	4885395	78
Insertion	Chr2	25797065	25797065	1
Insertion	Chr3	25249297	25249297	1
Insertion	Chr4	24944565	24944565	1
Insertion	Chr5	10732526	10732526	1
Insertion	Chr5	10776599	10776602	4
Insertion	Chr5	25429885	25429886	2
Insertion	Chr9	21649947	21649948	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr9	6848567	6849145
Inversion	Chr12	8418967	8419191
Inversion	Chr5	15705421	15705683

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	5944357	Chr7	18282706
Translocation	Chr11	13893260	Chr2	10875028
Translocation	Chr11	13893261	Chr2	10875028

Main menu

You are here

Search Nipponbare