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Mutant Information

Mutant Name	FN4406-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4406-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42188479	A-G	HET	INTERGENIC
SBS	Chr2	3002729	C-T	HET	INTERGENIC
SBS	Chr5	20936030	G-A	HET	INTERGENIC
SBS	Chr6	30037669	C-A	HET	START_GAINED
SBS	Chr9	2975094	C-T	HET	INTERGENIC
SBS	Chr9	11166494	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	22658182	T-C	HET	INTERGENIC
SBS	Chr11	12631569	C-T	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	65882	65884	2
Deletion	Chr10	921349	921350	1
Deletion	Chr10	1085369	1085370	1
Deletion	Chr2	2418968	2418969	1
Deletion	Chr10	6039000	6039021	21
Deletion	Chr1	6232088	6232089	1
Deletion	Chr7	11782994	11782995	1
Deletion	Chr10	13822078	13822079	1
Deletion	Chr2	14886599	14886600	1
Deletion	Chr5	23231369	23231370	1
Deletion	Chr5	25082001	25094000	12000
Deletion	Chr1	25848937	25848938	1
Deletion	Chr3	29970735	29970736	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	11687381	11687414	34
Insertion	Chr3	18172564	18172564	1
Insertion	Chr9	174058	174058	1
Insertion	Chr10	5173392	5173442	51
Insertion	Chr10	21842335	21842335	1
Insertion	Chr11	7370384	7370448	65
Insertion	Chr11	25634717	25634731	15	LOC_Os11g42590
Insertion	Chr12	4130499	4130499	1	LOC_Os12g08100
Insertion	Chr12	6696725	6696728	4
Insertion	Chr12	7427387	7427398	12
Insertion	Chr12	22116317	22116322	6

No Inversion

No Translocation