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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13807087	C-T	HET	INTERGENIC
SBS	Chr1	25845369	A-G	HOMO	INTERGENIC
SBS	Chr1	26675722	A-G	HET	INTRON
SBS	Chr1	35078857	C-T	HOMO	INTERGENIC
SBS	Chr2	17593236	C-T	HET	INTRON
SBS	Chr3	487107	C-T	HOMO	INTERGENIC
SBS	Chr3	5572770	C-T	HET	INTERGENIC
SBS	Chr3	29773587	A-G	HOMO	INTRON
SBS	Chr3	35244839	C-T	HET	INTERGENIC
SBS	Chr4	19226795	G-A	HOMO	INTERGENIC
SBS	Chr4	19226916	A-G	HOMO	INTERGENIC
SBS	Chr4	19226925	A-G	HOMO	INTERGENIC
SBS	Chr5	17448909	G-A	HET	INTRON
SBS	Chr5	17494853	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30180
SBS	Chr5	18243057	T-A	HET	INTERGENIC
SBS	Chr5	18243058	C-T	HET	INTERGENIC
SBS	Chr5	18243074	G-C	HET	INTERGENIC
SBS	Chr6	8619271	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	7828659	G-A	HOMO	INTRON
SBS	Chr7	13497752	C-T	HOMO	INTRON
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	169016	T-A	HET	INTERGENIC
SBS	Chr8	3343153	T-A	HOMO	INTERGENIC
SBS	Chr8	6380190	A-C	HET	INTERGENIC
SBS	Chr8	9452014	T-A	HET	INTRON
SBS	Chr8	13777220	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	21900330	A-T	HET	INTERGENIC
SBS	Chr9	1191997	G-A	HET	INTRON
SBS	Chr9	3392067	T-C	HET	INTRON
SBS	Chr9	14325740	A-T	HOMO	INTERGENIC
SBS	Chr9	21154432	C-T	HET	INTERGENIC
SBS	Chr10	16653638	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31770
SBS	Chr10	16824652	T-A	HET	INTRON
SBS	Chr10	16824653	G-T	HET	INTRON
SBS	Chr11	2119110	C-G	HET	INTERGENIC
SBS	Chr11	6005837	G-A	HET	INTERGENIC
SBS	Chr12	12586296	C-T	HET	INTRON

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	486941	486942	1
Deletion	Chr12	2140456	2146221	5765	LOC_Os12g04960
Deletion	Chr9	4244678	4244687	9
Deletion	Chr8	5093611	5093615	4
Deletion	Chr1	5505380	5521178	15798	2
Deletion	Chr1	5646927	5646929	2
Deletion	Chr7	7051152	7051153	1
Deletion	Chr8	10102459	10102467	8	LOC_Os08g16480
Deletion	Chr6	11444801	11444807	6
Deletion	Chr9	11499050	11499059	9
Deletion	Chr6	12203800	12203801	1
Deletion	Chr2	12292318	12292321	3
Deletion	Chr2	12384973	12384977	4
Deletion	Chr2	12458371	12458372	1
Deletion	Chr6	13334507	13334514	7
Deletion	Chr4	17576771	17577212	441
Deletion	Chr4	17577969	17578010	41
Deletion	Chr10	17726172	17726173	1
Deletion	Chr1	19326111	19326112	1
Deletion	Chr4	20474225	20474253	28
Deletion	Chr2	27265115	27265142	27
Deletion	Chr2	27835001	27894000	59000	5
Deletion	Chr2	31374666	31374672	6
Deletion	Chr1	41265764	41265770	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	20602882	20602883	2
Insertion	Chr1	2564497	2564498	2
Insertion	Chr9	7196896	7196897	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4195885	4431309	2
Inversion	Chr3	4195899	4431310	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18195115	Chr1	19829580	LOC_Os01g35800

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