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Mutant Information

Mutant Name	FN4411-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4411-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5235767	T-A	HET	INTERGENIC
SBS	Chr1	24422738	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g42920
SBS	Chr1	28532504	G-T	HET	INTRON
SBS	Chr1	30529441	C-A	HET	INTERGENIC
SBS	Chr2	1799602	G-T	HET	INTERGENIC
SBS	Chr2	4127349	G-A	HET	UTR_3_PRIME
SBS	Chr2	10658108	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	20996897	G-C	HOMO	START_GAINED
SBS	Chr2	22122633	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	31844879	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	8122050	G-C	HOMO	INTERGENIC
SBS	Chr3	12545523	G-A	HET	INTERGENIC
SBS	Chr3	17220471	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	18835293	C-T	HET	SPLICE_SITE_REGION
SBS	Chr4	2828590	C-A	HOMO	INTRON
SBS	Chr4	21878377	C-A	HET	INTERGENIC
SBS	Chr4	22163134	C-A	HOMO	INTRON
SBS	Chr4	22288026	G-A	HOMO	INTERGENIC
SBS	Chr5	2323930	A-G	HET	INTERGENIC
SBS	Chr5	3246711	A-T	HET	INTRON
SBS	Chr5	8063655	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14330
SBS	Chr5	27369589	C-T	HET	INTERGENIC
SBS	Chr6	10794654	C-T	HET	INTRON
SBS	Chr6	16294958	G-A	HOMO	INTERGENIC
SBS	Chr6	17378618	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	27026994	C-A	HET	INTRON
SBS	Chr7	18674541	G-T	HET	INTERGENIC
SBS	Chr7	24671412	T-A	HET	INTERGENIC
SBS	Chr8	10583573	G-A	HET	INTERGENIC
SBS	Chr9	1816789	G-A	HOMO	INTRON
SBS	Chr9	6505140	G-A	HET	INTRON
SBS	Chr9	8333803	T-A	HET	INTERGENIC
SBS	Chr9	11544240	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	15320766	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25540
SBS	Chr9	16742093	C-T	HET	INTRON
SBS	Chr10	1352580	A-T	HET	INTERGENIC
SBS	Chr10	4732903	C-A	HET	INTERGENIC
SBS	Chr10	11364343	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22010
SBS	Chr10	11379262	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22030
SBS	Chr11	4204175	G-C	HET	INTERGENIC
SBS	Chr11	8433900	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14970
SBS	Chr11	15392279	C-A	HET	INTERGENIC
SBS	Chr11	18851165	A-T	HET	SYNONYMOUS_CODING
SBS	Chr11	19378177	C-T	HET	INTERGENIC
SBS	Chr11	20055148	A-G	HET	INTERGENIC
SBS	Chr11	20304055	A-G	HET	INTRON
SBS	Chr11	20734080	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35380
SBS	Chr12	3613661	C-T	HET	INTERGENIC
SBS	Chr12	21790628	G-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	114900	114902	2	LOC_Os09g01100
Deletion	Chr10	1100019	1100024	5
Deletion	Chr1	2855673	2855679	6
Deletion	Chr8	4195753	4195754	1
Deletion	Chr6	5948265	5948266	1
Deletion	Chr12	6730810	6730816	6
Deletion	Chr4	7081112	7081114	2
Deletion	Chr1	7861415	7861419	4
Deletion	Chr9	8820386	8820387	1
Deletion	Chr3	10336810	10336811	1
Deletion	Chr5	10963299	10963300	1
Deletion	Chr3	12276092	12276100	8
Deletion	Chr6	16163800	16163877	77	LOC_Os06g28410
Deletion	Chr12	17140051	17140052	1
Deletion	Chr11	19387404	19387408	4
Deletion	Chr7	21545593	21545599	6
Deletion	Chr6	21806361	21806362	1
Deletion	Chr10	22120164	22120187	23
Deletion	Chr3	23305307	23305317	10
Deletion	Chr1	24653428	24653429	1
Deletion	Chr7	25108189	25108191	2
Deletion	Chr7	26828542	26828543	1
Deletion	Chr7	27535793	27535794	1
Deletion	Chr2	28724271	28724292	21
Deletion	Chr5	29921175	29921529	354
Deletion	Chr4	34164823	34164836	13
Deletion	Chr2	35819818	35819819	1
Deletion	Chr3	36197599	36197600	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27614212	27614212	1
Insertion	Chr1	9464647	9464649	3
Insertion	Chr1	15346254	15346329	76
Insertion	Chr1	20735859	20735861	3
Insertion	Chr4	703349	703360	12
Insertion	Chr4	32412606	32412665	60
Insertion	Chr5	11563626	11563627	2
Insertion	Chr6	4671122	4671186	65
Insertion	Chr8	14504369	14504416	48
Insertion	Chr9	8031922	8031923	2
Insertion	Chr9	14182830	14182831	2
Insertion	Chr10	752229	752229	1	LOC_Os10g02190
Insertion	Chr11	5481470	5481475	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15196369	15196525
Inversion	Chr5	20987359	21755611

No Translocation

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