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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10854118	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	34825230	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g60220
SBS	Chr10	18941317	C-T	HET	UTR_3_PRIME
SBS	Chr10	9131943	C-G	HET	INTERGENIC
SBS	Chr11	12738311	G-A	HET	INTERGENIC
SBS	Chr11	4264592	G-A	HET	SPLICE_SITE_REGION
SBS	Chr11	4588897	G-A	HET	INTRON
SBS	Chr11	5413406	C-T	HET	INTERGENIC
SBS	Chr11	5703046	G-T	HET	INTERGENIC
SBS	Chr12	14303145	C-T	HOMO	INTERGENIC
SBS	Chr12	18323717	A-C	HET	INTERGENIC
SBS	Chr2	16792964	T-C	HET	INTERGENIC
SBS	Chr2	18530418	G-A	HOMO	INTERGENIC
SBS	Chr2	508720	A-G	HET	INTERGENIC
SBS	Chr3	1185850	C-T	HET	INTERGENIC
SBS	Chr3	18553241	G-C	HET	INTERGENIC
SBS	Chr3	20156064	G-T	HOMO	INTERGENIC
SBS	Chr3	34906794	A-G	HOMO	UTR_3_PRIME
SBS	Chr5	12109308	C-T	HET	INTERGENIC
SBS	Chr5	13254820	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	2634969	G-A	HET	UTR_3_PRIME
SBS	Chr6	14298125	C-T	HET	INTERGENIC
SBS	Chr6	17846080	G-A	HET	INTERGENIC
SBS	Chr6	19479111	T-A	HET	INTERGENIC
SBS	Chr6	20106646	A-G	HET	INTRON
SBS	Chr6	20430840	A-G	HET	INTRON
SBS	Chr6	27743006	T-C	HOMO	INTERGENIC
SBS	Chr7	10809456	T-C	HET	INTERGENIC
SBS	Chr7	14032587	G-A	HET	INTERGENIC
SBS	Chr8	11631492	C-A	HOMO	INTERGENIC
SBS	Chr8	26469665	G-A	HET	INTERGENIC
SBS	Chr8	4543228	G-A	HET	INTERGENIC
SBS	Chr9	12089269	G-T	HET	INTERGENIC
SBS	Chr9	17947495	C-T	HET	INTERGENIC
SBS	Chr9	18931699	C-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	116230	116238	8
Deletion	Chr2	2010992	2010993	1
Deletion	Chr1	2340186	2340188	2
Deletion	Chr8	2514453	2514465	12
Deletion	Chr4	3332047	3332048	1
Deletion	Chr1	3580336	3580338	2
Deletion	Chr5	5110438	5110449	11
Deletion	Chr2	6468372	6468373	1
Deletion	Chr7	6683360	6683451	91
Deletion	Chr9	7985848	7985849	1
Deletion	Chr11	8800486	8800487	1
Deletion	Chr8	10271198	10271199	1
Deletion	Chr7	10329907	10329909	2
Deletion	Chr8	12822637	12822650	13	LOC_Os08g21520
Deletion	Chr1	14253230	14253234	4
Deletion	Chr3	15793848	15793849	1
Deletion	Chr4	17592734	17592735	1
Deletion	Chr4	18586412	18586414	2
Deletion	Chr5	21450001	21661000	211000	42
Deletion	Chr5	21666001	21822000	156000	21
Deletion	Chr5	22074821	22074822	1
Deletion	Chr1	22467015	22467019	4
Deletion	Chr8	25262107	25262166	59
Deletion	Chr6	25687939	25687978	39	LOC_Os06g42710
Deletion	Chr4	26162508	26162510	2
Deletion	Chr1	33270001	33471000	201000	29
Deletion	Chr1	33814001	33852000	38000	7
Deletion	Chr1	33861001	33899000	38000	7
Deletion	Chr1	33902001	33916000	14000	4
Deletion	Chr4	34344996	34344997	1	LOC_Os04g57690

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24882519	24882553	35
Insertion	Chr1	7861946	7862016	71
Insertion	Chr11	805707	805710	4
Insertion	Chr2	4117537	4117537	1
Insertion	Chr3	18237928	18237928	1
Insertion	Chr3	26086671	26086671	1
Insertion	Chr5	20500924	20500924	1
Insertion	Chr6	1379974	1379974	1
Insertion	Chr7	21572763	21572763	1
Insertion	Chr8	13202778	13202778	1
Insertion	Chr9	10132896	10132896	1
Insertion	Chr9	4348573	4348573	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1192961	1193105
Inversion	Chr6	1769713	1925284	LOC_Os06g04490
Inversion	Chr6	1925292	1937812	LOC_Os06g04490
Inversion	Chr1	2408008	2408164	LOC_Os01g05140
Inversion	Chr6	12545936	12829101	LOC_Os06g21700
Inversion	Chr3	12767439	12767686	LOC_Os03g22270
Inversion	Chr1	33274953	33813983	LOC_Os01g58500
Inversion	Chr1	33470515	33915172	LOC_Os01g58670

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	476815	Chr5	21839312
Translocation	Chr12	8345709	Chr4	20528459
Translocation	Chr6	12545939	Chr5	21834574	LOC_Os06g21700
Translocation	Chr5	15283642	Chr3	20458759	LOC_Os03g26760
Translocation	Chr8	15300256	Chr2	20643819
Translocation	Chr8	17933492	Chr5	8852673	2
Translocation	Chr3	22591018	Chr1	38144214
Translocation	Chr3	22591206	Chr1	38144164
Translocation	Chr2	31430223	Chr1	2149546
Translocation	Chr2	31432021	Chr1	2149536	LOC_Os01g54630

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