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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2242308	A-T	HET	INTERGENIC
SBS	Chr1	32215750	C-T	HET	INTERGENIC
SBS	Chr1	34167853	G-T	HET	INTERGENIC
SBS	Chr1	34167854	A-T	HET	INTERGENIC
SBS	Chr1	37111480	G-A	HET	INTERGENIC
SBS	Chr1	40215085	G-C	HET	START_LOST	LOC_Os01g69200
SBS	Chr1	40233513	A-G	HET	INTERGENIC
SBS	Chr10	3713246	C-T	HOMO	INTERGENIC
SBS	Chr10	8351047	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	21339603	C-T	HET	INTERGENIC
SBS	Chr11	21878798	T-A	HET	INTERGENIC
SBS	Chr11	21878802	G-A	HET	INTERGENIC
SBS	Chr12	16658843	A-G	HOMO	INTERGENIC
SBS	Chr2	11143421	G-A	HET	INTRON
SBS	Chr2	32534072	A-G	HET	INTERGENIC
SBS	Chr2	5113170	C-A	HET	INTERGENIC
SBS	Chr3	10875330	G-A	HOMO	INTRON
SBS	Chr3	15537449	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27140
SBS	Chr3	15537450	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	29290235	T-A	HOMO	INTERGENIC
SBS	Chr3	9424962	A-G	HET	INTERGENIC
SBS	Chr4	33833945	C-T	HET	INTERGENIC
SBS	Chr4	4314173	T-A	HOMO	INTERGENIC
SBS	Chr5	18131863	T-A	HET	INTERGENIC
SBS	Chr5	18131864	C-A	HET	INTERGENIC
SBS	Chr5	27084215	C-T	HET	INTERGENIC
SBS	Chr5	7042202	C-G	HET	INTERGENIC
SBS	Chr5	8808588	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15560
SBS	Chr6	11549979	T-C	HOMO	INTERGENIC
SBS	Chr6	11762049	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	16858808	A-G	HET	INTRON
SBS	Chr7	20172607	G-A	HET	INTERGENIC
SBS	Chr7	21689024	G-T	HET	INTERGENIC
SBS	Chr7	5984100	G-A	HET	INTERGENIC
SBS	Chr8	14955798	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	16939343	G-A	HOMO	INTERGENIC
SBS	Chr8	7752505	A-G	HET	INTERGENIC
SBS	Chr8	8487436	C-T	HET	INTERGENIC
SBS	Chr9	14007240	C-T	HOMO	INTERGENIC
SBS	Chr9	15968283	T-A	HET	INTERGENIC
SBS	Chr9	22740408	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g39620

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	150415	150416	1
Deletion	Chr9	290011	290012	1
Deletion	Chr11	1104953	1104958	5	LOC_Os11g03090
Deletion	Chr7	2789978	2789979	1
Deletion	Chr10	3038362	3038364	2
Deletion	Chr6	3629109	3629110	1	LOC_Os06g07530
Deletion	Chr8	3971417	3971418	1
Deletion	Chr4	4335343	4335344	1
Deletion	Chr12	4839702	4839703	1
Deletion	Chr10	4899386	4899428	42
Deletion	Chr9	5020621	5020626	5
Deletion	Chr8	6648654	6648671	17
Deletion	Chr4	7722161	7722162	1
Deletion	Chr8	7866161	7866205	44
Deletion	Chr2	8031770	8031771	1
Deletion	Chr5	8296001	8306000	10000	3
Deletion	Chr4	10480252	10480341	89	LOC_Os04g18840
Deletion	Chr7	10607229	10607230	1
Deletion	Chr5	11658001	11811000	153000	21
Deletion	Chr2	11744489	11744507	18
Deletion	Chr5	11816001	12061000	245000	37
Deletion	Chr5	12065001	12137000	72000	14
Deletion	Chr5	12138001	12166000	28000	3
Deletion	Chr7	12475514	12475515	1
Deletion	Chr4	13072075	13072076	1
Deletion	Chr3	16310097	16310098	1
Deletion	Chr10	17021001	17056000	35000	5
Deletion	Chr8	17170424	17170425	1
Deletion	Chr7	18468662	18468663	1
Deletion	Chr2	21197046	21197093	47
Deletion	Chr11	21991339	21991340	1
Deletion	Chr7	23507001	23736000	229000	34
Deletion	Chr11	23710891	23710894	3
Deletion	Chr8	25811038	25811040	2	LOC_Os08g40800
Deletion	Chr11	26646569	26646571	2
Deletion	Chr3	30393956	30393964	8

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12264001	12264001	1
Insertion	Chr1	23610788	23610788	1
Insertion	Chr1	29923463	29923463	1
Insertion	Chr10	8366424	8366425	2
Insertion	Chr11	17989032	17989034	3
Insertion	Chr11	1973702	1973706	5
Insertion	Chr12	10239120	10239134	15
Insertion	Chr12	14971531	14971531	1
Insertion	Chr2	26793251	26793259	9
Insertion	Chr2	26793252	26793266	15
Insertion	Chr3	20551471	20551472	2
Insertion	Chr3	24300047	24300047	1
Insertion	Chr3	31099151	31099151	1
Insertion	Chr4	21124636	21124636	1
Insertion	Chr4	28470402	28470403	2
Insertion	Chr4	4268572	4268572	1
Insertion	Chr5	11867121	11867121	1
Insertion	Chr5	12061939	12061939	1
Insertion	Chr6	12812502	12812502	1
Insertion	Chr7	24240101	24240179	79
Insertion	Chr8	6514991	6514991	1
Insertion	Chr9	111531	111532	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1364326	1471623	LOC_Os08g03180
Inversion	Chr8	1364328	1471623	LOC_Os08g03180
Inversion	Chr11	15282918	16119125	2
Inversion	Chr7	22320778	22502362
Inversion	Chr7	22320787	22502363

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1543916	Chr6	1086581
Translocation	Chr9	1544022	Chr6	1087221
Translocation	Chr2	3013459	Chr1	21652279	LOC_Os02g06040
Translocation	Chr5	10823806	Chr1	37796903	LOC_Os05g18680
Translocation	Chr5	10824181	Chr1	37796899	LOC_Os01g19150
Translocation	Chr10	15858529	Chr9	9929640
Translocation	Chr10	15858549	Chr9	9929223
Translocation	Chr11	20710569	Chr5	10290823
Translocation	Chr11	20714298	Chr5	10824189

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