Search Nipponbare

Mutant Information

Mutant Name	FN4417-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4417-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16999156	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31090
SBS	Chr10	8355358	C-T	HET	INTERGENIC
SBS	Chr10	8355359	C-T	HET	INTERGENIC
SBS	Chr10	8393373	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16850
SBS	Chr11	11642319	G-A	HOMO	STOP_GAINED	LOC_Os11g20150
SBS	Chr11	13596972	T-G	HOMO	SPLICE_SITE_DONOR	LOC_Os11g23990
SBS	Chr11	171327	G-C	HET	INTERGENIC
SBS	Chr11	26082453	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g43240
SBS	Chr11	26391665	T-C	HET	INTERGENIC
SBS	Chr11	621892	G-A	HET	INTERGENIC
SBS	Chr11	9027059	A-G	HOMO	INTERGENIC
SBS	Chr12	14520514	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	15454205	T-A	HET	INTERGENIC
SBS	Chr12	15824342	C-T	HET	INTERGENIC
SBS	Chr12	16893851	G-A	HET	INTERGENIC
SBS	Chr12	18051027	C-T	HET	INTERGENIC
SBS	Chr2	21390417	A-T	HET	INTERGENIC
SBS	Chr2	5500760	C-G	HET	INTERGENIC
SBS	Chr3	15103324	C-T	HET	INTERGENIC
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	26403640	G-A	HOMO	INTRON
SBS	Chr3	29691064	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g51770
SBS	Chr4	1685574	C-T	HET	INTERGENIC
SBS	Chr4	27021364	T-C	HET	INTERGENIC
SBS	Chr4	28989553	C-T	HET	INTERGENIC
SBS	Chr5	17150646	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	17571046	G-T	HOMO	INTRON
SBS	Chr5	18269357	G-A	HET	INTERGENIC
SBS	Chr5	5623414	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g10300
SBS	Chr6	16296151	A-T	HOMO	INTERGENIC
SBS	Chr6	16895826	C-A	HOMO	INTERGENIC
SBS	Chr6	19379856	C-T	HOMO	INTERGENIC
SBS	Chr6	25025484	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41750
SBS	Chr6	28539490	A-G	HOMO	INTERGENIC
SBS	Chr7	18866478	C-A	HET	INTERGENIC
SBS	Chr7	20429797	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g34150
SBS	Chr7	27892506	A-T	HOMO	INTERGENIC
SBS	Chr7	6577852	C-T	HOMO	INTERGENIC
SBS	Chr7	6773843	G-A	HET	INTERGENIC
SBS	Chr8	10730945	G-A	HET	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	6396211	C-G	HOMO	INTERGENIC
SBS	Chr9	1063798	T-C	HET	INTERGENIC
SBS	Chr9	14777241	A-T	HET	INTERGENIC
SBS	Chr9	18352111	G-T	HET	SYNONYMOUS_CODING
SBS	Chr9	21634938	G-T	HOMO	INTRON
SBS	Chr9	6414944	G-T	HET	SYNONYMOUS_CODING

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	274845	274846	1	LOC_Os08g01420
Deletion	Chr10	1096043	1096063	20
Deletion	Chr2	1675486	1675487	1
Deletion	Chr12	2341113	2341143	30
Deletion	Chr9	3100111	3100112	1
Deletion	Chr2	3227715	3227734	19	LOC_Os02g06470
Deletion	Chr7	3251308	3251309	1
Deletion	Chr1	3951643	3951645	2
Deletion	Chr6	4068597	4068609	12
Deletion	Chr1	5045834	5045835	1
Deletion	Chr1	5244214	5244218	4
Deletion	Chr9	6065366	6065368	2
Deletion	Chr4	6483635	6483636	1
Deletion	Chr1	7850035	7850066	31
Deletion	Chr3	8967936	8967945	9
Deletion	Chr11	10371225	10371238	13
Deletion	Chr6	10514058	10514059	1
Deletion	Chr3	11785221	11785223	2
Deletion	Chr9	12329288	12329295	7
Deletion	Chr7	13025272	13025275	3	LOC_Os07g23100
Deletion	Chr7	18968654	18968710	56	LOC_Os07g31900
Deletion	Chr6	19363195	19363196	1
Deletion	Chr2	20359970	20359973	3
Deletion	Chr12	21069314	21069315	1
Deletion	Chr1	21748270	21748275	5
Deletion	Chr4	21771864	21771913	49
Deletion	Chr5	22379405	22379411	6
Deletion	Chr7	23085677	23085678	1
Deletion	Chr11	23484428	23484429	1
Deletion	Chr7	24116092	24116093	1	LOC_Os07g40220
Deletion	Chr3	26521883	26521887	4
Deletion	Chr8	27119051	27119061	10	LOC_Os08g42890
Deletion	Chr8	28290468	28290471	3
Deletion	Chr7	28312695	28312696	1	LOC_Os07g47350
Deletion	Chr4	28380112	28380113	1	LOC_Os04g47830
Deletion	Chr3	30716089	30716091	2	LOC_Os03g53560
Deletion	Chr2	32223953	32223954	1
Deletion	Chr4	32684713	32684714	1	LOC_Os04g54940
Deletion	Chr1	34173335	34173337	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27464093	27464097	5
Insertion	Chr1	31478798	31478798	1
Insertion	Chr1	31602638	31602638	1
Insertion	Chr11	28666703	28666726	24
Insertion	Chr12	10315562	10315562	1
Insertion	Chr12	26757684	26757689	6	LOC_Os12g43090
Insertion	Chr2	32768240	32768240	1
Insertion	Chr3	15138764	15138772	9	LOC_Os03g26510
Insertion	Chr3	15704518	15704518	1
Insertion	Chr4	14979800	14979803	4
Insertion	Chr5	12748126	12748126	1
Insertion	Chr6	23566507	23566507	1
Insertion	Chr6	23644970	23644978	9
Insertion	Chr7	24289012	24289013	2
Insertion	Chr8	18790086	18790086	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4801388	4801793
Inversion	Chr1	18332612	18332823	LOC_Os01g33260
Inversion	Chr9	19447123	19447381
Inversion	Chr3	27279416	27279508
Inversion	Chr3	28260098	29019996	LOC_Os03g50810
Inversion	Chr2	30054497	30054628	LOC_Os02g49150
Inversion	Chr1	33402538	33402788

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6514113	Chr8	25151653
Translocation	Chr9	6514772	Chr8	25151674	LOC_Os08g11080
Translocation	Chr9	13634594	Chr7	9850300
Translocation	Chr9	13638793	Chr7	9849161	LOC_Os07g24050
Translocation	Chr8	25067026	Chr1	3789796	LOC_Os01g43750
Translocation	Chr8	25067029	Chr1	3789800	LOC_Os01g43750

Main menu

You are here

Search Nipponbare