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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22940052	A-T	HET	INTERGENIC
SBS	Chr1	29802655	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51840
SBS	Chr2	30475645	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr2	34631648	G-A	HET	INTERGENIC
SBS	Chr3	13459275	C-T	HET	INTERGENIC
SBS	Chr3	13502297	G-A	HOMO	INTERGENIC
SBS	Chr3	22357240	A-G	HOMO	INTERGENIC
SBS	Chr3	35875648	A-G	HOMO	INTERGENIC
SBS	Chr4	1427875	G-A	HET	INTERGENIC
SBS	Chr4	2304854	G-A	HET	INTERGENIC
SBS	Chr4	18343261	G-T	HET	INTRON
SBS	Chr4	22072944	G-A	HOMO	INTERGENIC
SBS	Chr4	22091823	A-G	HET	INTRON
SBS	Chr4	27463923	T-C	HOMO	INTERGENIC
SBS	Chr4	33029853	T-C	HOMO	INTERGENIC
SBS	Chr5	2537775	T-C	HET	INTRON
SBS	Chr5	4630713	A-C	HET	INTERGENIC
SBS	Chr5	14267529	T-C	HET	INTERGENIC
SBS	Chr5	20959112	C-T	HET	INTERGENIC
SBS	Chr7	4408318	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g08540
SBS	Chr7	16548340	G-T	HET	INTERGENIC
SBS	Chr7	18832477	C-T	HOMO	INTERGENIC
SBS	Chr8	1816990	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	22183551	T-A	HOMO	INTERGENIC
SBS	Chr10	16683195	G-C	HET	INTERGENIC
SBS	Chr11	12289823	G-A	HOMO	INTERGENIC
SBS	Chr11	25098969	A-G	HET	INTERGENIC
SBS	Chr12	4028920	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g07940
SBS	Chr12	12804410	G-T	HET	INTERGENIC
SBS	Chr12	16156455	A-T	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	19001	79000	60000	6
Deletion	Chr5	289666	289671	5
Deletion	Chr7	890205	890215	10
Deletion	Chr11	2759613	2759614	1
Deletion	Chr9	4283001	4297000	14000	3
Deletion	Chr3	8619415	8619423	8	LOC_Os03g15620
Deletion	Chr12	9044275	9044292	17
Deletion	Chr12	9534145	9534156	11
Deletion	Chr9	9736200	9736204	4
Deletion	Chr11	11383344	11383358	14
Deletion	Chr1	11751143	11751144	1
Deletion	Chr4	14130626	14130631	5
Deletion	Chr7	14308608	14308609	1
Deletion	Chr7	18857202	18857218	16
Deletion	Chr2	19963538	19963572	34
Deletion	Chr1	20629747	20629748	1	LOC_Os01g36970
Deletion	Chr1	21956327	21956328	1	2
Deletion	Chr2	22552512	22552597	85
Deletion	Chr2	25986691	25986700	9
Deletion	Chr4	28098055	28098058	3
Deletion	Chr1	28133001	28151000	18000	LOC_Os01g49000
Deletion	Chr3	32082885	32082889	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	23717351	23717351	1
Insertion	Chr5	28034317	28034317	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2678825	2682104	LOC_Os05g05390
Inversion	Chr9	4259995	4296664	LOC_Os09g08310
Inversion	Chr12	20659456	20667504
Inversion	Chr1	22803489	23210076	LOC_Os01g40990

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13048342	Chr3	13584327
Translocation	Chr3	13509633	Chr1	15624741	LOC_Os03g23820
Translocation	Chr7	15609179	Chr3	13585094
Translocation	Chr11	21278028	Chr10	23156967	LOC_Os10g42960

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